Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03739 ATGACGACGGAGAACAACACCGTAACTGTAAACCCTGGCCATGAACAACGACCAAAAGTGGTGGTTATAACAGGCCCAACCGGTTCCGGTAAATCAAAGCTAGCCGTTGATTTAGCCTCAAACTTCTCAATCGAAGTAATCAACGCCGATTCCATGCAAGTCTACAGTGGCCTCGATATTCTCACCAATAAACTCCCCTTCTCTGAACAAAACGGTGTGCCGCATCATCTATTGGGTACtgtaaaccctaattttgaatTCACTGCCAAAGCTTTTCGTGATTCTGCTATTCCCatcATTGATGACATATTGTCTAGGAACAACTTACCTGTTATTGTTGGTGGTACTAATTACTATATACAGGCTCTTGTGAGTTCATTTCTGTTAGATGATTCAACAGATGATTTGAATGAAAGCTATTTGGGTGATTCACCTGGTATCACAGGGCATGATAATGATTTGTGTTCTGAAAATGACAGTTCAAGCAACAGTTATGATTTTCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGataaATCAGTACGTTAGTTTGTACTCTCGAACTGGTGTTCTTCCCAGCAAAGTTTTTCAAGGACAGGCAGCAGAGAAGTGGGGTCAAGCTGATAATTTAAGATATGATTGTTGTTTTATAAGTGTGGACGCATCTATCCCGGTGCTGGACAGATATGTAGAGCAAAGGGTAGATGATATGATGGATGCAGGATTACTCAATGAAGTCTATGACATTTATACTATGAATGCAGATTATACCAGAGGTTTGCGACAGGCCATTGGTGTCCGTGAATTTGAGGATCTTCTACGAACTAGTGTtttcaaaaacataaataaaaaagaggtGGAATTAATTGACAGATCAAACTTAGAAAATAGTGAGCCATTGTTTCATGGCAATTTGCTGGAGTGGTTGAGAACTTCCCCTGATACTAAATCCACAACTCTTTTGGAAGAAGCAATTGAGAAAGTAAAGGTTAATACCAGGAGACTTGTCCGGCGTCAGAAGAGGATGCTCAGTCGACTTCAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACAGAATCGATATTGAGTAAGCTATCAAATGATGTATGGATTAGCCAAGTGGTTGAATCTGCCACGAAGATAGTGACATCTTTCCTAAGCGAGAATGGTAGCTTGTCATCGTCAAATGGCAATGGGACGAAAATAATCCAAAGGGACCTCTGGACTCAATACACTTGCAAGGCCTGCAATGACCGGGTTCTTAGAGGATTACATGAATGGGAACAACACATACGTGGTCGTGGACATCGTAAACGTATTTCTAGTCTCAAGAGCAAGGCAAAAGGTCTTCGTTTTGTGGAACAGAAGCGTGAAACTTCTGAACGCGAATGCTCAGATATATTGTAG 1440 0.3972 MTTENNTVTVNPGHEQRPKVVVITGPTGSGKSKLAVDLASNFSIEVINADSMQVYSGLDILTNKLPFSEQNGVPHHLLGTVNPNFEFTAKAFRDSAIPIIDDILSRNNLPVIVGGTNYYIQALVSSFLLDDSTDDLNESYLGDSPGITGHDNDLCSENDSSSNSYDFLKDIDPVAANRIHPNNHRKINQYVSLYSRTGVLPSKVFQGQAAEKWGQADNLRYDCCFISVDASIPVLDRYVEQRVDDMMDAGLLNEVYDIYTMNADYTRGLRQAIGVREFEDLLRTSVFKNINKKEVELIDRSNLENSEPLFHGNLLEWLRTSPDTKSTTLLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWDIHYVDSTESILSKLSNDVWISQVVESATKIVTSFLSENGSLSSSNGNGTKIIQRDLWTQYTCKACNDRVLRGLHEWEQHIRGRGHRKRISSLKSKAKGLRFVEQKRETSERECSDIL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03739 479 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 400 IPR039657 -
Tsu02g03739 479 Gene3D - 18 418 IPR027417 -
Tsu02g03739 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 261 IPR027417 -
Tsu02g03739 479 TIGRFAM miaA: tRNA dimethylallyltransferase 20 284 IPR018022 GO:0008033
Tsu02g03739 479 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 16 400 - -
Tsu02g03739 479 Hamap tRNA dimethylallyltransferase [miaA]. 20 374 IPR018022 GO:0008033
Tsu02g03739 479 Gene3D - 151 209 - -
Tsu02g03739 479 Pfam IPP transferase 53 350 - -
Tsu02g03739 479 Gene3D Classic Zinc Finger 419 463 - -
Tsu02g03739 479 CDD NK 20 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03739 Tsu-Chr2 42271844 42276227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03739 23 456 C2H2 Transcription Factor Family AT2G27760 56.849 6.18e-169 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03739 K00791 - gmx:100792690 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03739 02 42271844 42276227 Tsu02g03739 02 42271844 42276227 ECH