Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03717 ATGGAAGATCAAAACTTGAACCTACCTGCTGCCATGTCACCAAGTTCAACCCAAGACGGGTcagaaaccaacaacaacaaccctgTTGCTACTGAAGCTGTCAGAGTTGTTGATGTTGGTTCAGACACTGGAGCAAAGTCTGCACCTTCAGGTTCAAACTTTCCTCCGGTGAAAAGGGGTCGAGGAAGACCTCGGAAGTATGAGGTTCGTGGGAACCAGCCGTCTCCGGTACCAGTGACACCAACACCGGAGCATGCTATTCAGCCTTTCGGAAGTGAGGAGAAGCGTGGAAGGGGACGTCCTCGTGGTGGATGTGTTGCTGAAACTGCTGGAGGAAGTATCACACCTCATGTGATGACTGTTAACCCTGGAGAGGACGTGGTTGCAAAGATATTTGCATTTTTTCAAAATGCTCCTCGAGTCGCTAGTTGTGTACTCTCTGCTGCTGGCACAATATCAAGCGTTGTCCTTCGCCAACCTAATGTTCCTGGTGGTTTTGCAAGACATGAGGGCGAATTTGATATTGTATCATTAAGAGGATCATGCACCTTTACTACTGGTGCTGCTGCTGGTGGTATGCAGAGAAAAATTAGCATGTTGAGTGTTTTATTAGCCAAATCTAATGGAGAATTTTTTGGAGGTGCTATTGAGAATGCAATGATAGCTGCTACTCCTATTCCGCTGGTTATGGCAACATTCAAGCAAAACATAAGCCAACAAATCAAGAGAAAATACTCATCTCCACCTTCAACTGCTCCAAACAACATGCTGCCTAACATGAAAGTTCCAAGGTTAACTTTAGAAGAAGGAGAACCTAGCTGCCAAACAGGAAATGCAACAGCAAATTCTAATGGTGGTGTAGCAGTAGCAGATATGAATGTGGTAGCAGCTGAAACAACTAATGATGTGTCAGTGTCAGAAAATGTCCCTACTACTTATGCTGATGAAAATGTTCATTCTGATtctgttggtggtggtggtgttggtTTTGACCTTGAGAGCCAGGATCCTGAAACAGACCATTAA 1026 0.4259 MEDQNLNLPAAMSPSSTQDGSETNNNNPVATEAVRVVDVGSDTGAKSAPSGSNFPPVKRGRGRPRKYEVRGNQPSPVPVTPTPEHAIQPFGSEEKRGRGRPRGGCVAETAGGSITPHVMTVNPGEDVVAKIFAFFQNAPRVASCVLSAAGTISSVVLRQPNVPGGFARHEGEFDIVSLRGSCTFTTGAAAGGMQRKISMLSVLLAKSNGEFFGGAIENAMIAATPIPLVMATFKQNISQQIKRKYSSPPSTAPNNMLPNMKVPRLTLEEGEPSCQTGNATANSNGGVAVADMNVVAAETTNDVSVSENVPTTYADENVHSDSVGGGGVGFDLESQDPETDH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03717 341 PRINTS AT-hook-like domain signature 58 68 IPR017956 GO:0003677
Tsu02g03717 341 PRINTS AT-hook-like domain signature 93 104 IPR017956 GO:0003677
Tsu02g03717 341 CDD DUF296 115 233 IPR005175 -
Tsu02g03717 341 SMART AT_hook_2 95 107 IPR017956 GO:0003677
Tsu02g03717 341 SMART AT_hook_2 58 70 IPR017956 GO:0003677
Tsu02g03717 341 ProSiteProfiles PPC domain profile profile. 111 259 IPR005175 -
Tsu02g03717 341 MobiDBLite consensus disorder prediction 1 31 - -
Tsu02g03717 341 Gene3D - 116 250 - -
Tsu02g03717 341 PANTHER DUF296 DOMAIN PROTEIN 1 309 - -
Tsu02g03717 341 MobiDBLite consensus disorder prediction 312 341 - -
Tsu02g03717 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 309 IPR039605 GO:0003680
Tsu02g03717 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 113 239 - -
Tsu02g03717 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 116 234 IPR005175 -
Tsu02g03717 341 MobiDBLite consensus disorder prediction 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03717 Tsu-Chr2 42012003 42016549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03717 57 243 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 36.792 2.45e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03717 - - mtr:MTR_4g055833 342.043