Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03716 ATGTTAAATGTTGATTTTGAAGATTTAGAGAGTGGCGAAATCCGTCCCATACTTATCCGGGACGAGGATTTTGATGCTGGTTTGCTTAGGAGGAGGAGCAAATTAGAGAAGTTAGTGGCAAAGAAGAGTGCCAAGGTTGCATATGTAGCTGACAAGGGTTCAGTTAAATCTAGAAACGAAGAATTTGTTGTTGGTGTAACTTTTCCGAGTGAATTGAATGTTGGATCATCAATGGACAATGATAAGGATGAAGATGACGGAGCAGATGCTGCTTTGTCAAATAGCTCTGTTTCTGATGTCGAGACAGTCCCTTTGTCGCCTCTGTTGCAGTTGTCGTCTTCATCGGGAACAATTGGTGTGCCGAAGTCGAGTGTCTCCCATCTTTTTTCTGTCTATGGATTCTTGAGGTCATTCAGCACAGAATTGTTTCTTCATCCCTTTTATTTGGATGAATTTGTTGGTTCTTTGCATTGTCAAGTCTCCAACACTTTGATTGATGCGATTCACTTTTCCCTAATGCGGGTGTTAAGGCATCATCTGGAAACACTGTCATCTGAGGGATCTGAGCTTGCATCGCAATGCCTTAGGTGCAACAATTGGAGCTTGGTGGTTAAAGGGTACACCAAAGGACCCAAATGGAAGGAATTTTACGATGAGGTTTTTAGTAGTGAGTATTAA 678 0.4189 MLNVDFEDLESGEIRPILIRDEDFDAGLLRRRSKLEKLVAKKSAKVAYVADKGSVKSRNEEFVVGVTFPSELNVGSSMDNDKDEDDGADAALSNSSVSDVETVPLSPLLQLSSSSGTIGVPKSSVSHLFSVYGFLRSFSTELFLHPFYLDEFVGSLHCQVSNTLIDAIHFSLMRVLRHHLETLSSEGSELASQCLRCNNWSLVVKGYTKGPKWKEFYDEVFSSEY 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03716 225 MobiDBLite consensus disorder prediction 74 98 - -
Tsu02g03716 225 Pfam DDT domain 124 178 IPR018501 -
Tsu02g03716 225 ProSiteProfiles DDT domain profile. 122 182 IPR018501 -
Tsu02g03716 225 PANTHER PHD FINGER FAMILY PROTEIN 4 225 - -
Tsu02g03716 225 SMART testlast3 122 182 IPR018501 -
Tsu02g03716 225 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 4 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03716 Tsu-Chr2 41998153 41999547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03716 5 225 PHD Transcription Factor Family AT5G35210 36.929 3.01e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tsu02g03716 DDT 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03716 - - mtr:MTR_4g055920 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g04658 02 55615245 55622031 Tsu02g03716 02 41998153 41999547 PCT