Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03715 ATGGAGAAAACTAATGGTAGATCGAGAGGTCGTCCTAAGAAACGAAGAAAGGAGGATGAAAAGGAAGGGAAAACGGTTGCTGATGCTAAAAGGCAACCGTTGGAGGTGGCCAAACCAATAGCATTGGTTGGCAGGTTTGTGTTGAAGGAGTTCCCGGAAAATGGGATTTTTCTCGGTAAAGTTGTCTACTACGACAGTGGATTGTACAGAGTGAATTATGAGGATGGCGACTTTGAAGATTTAGAGAGTGGCGAAATCCGTCCCGTACTTATCCGGGACGAGGATTTTGATGCTGGCTTGGTAAGGAGGAGGAGTAAATTAGAGAAGTTAGTGGCTAAGAAGAGTGCCAAGGTTGCGGATGTAGCTGACGAGGGGTTAGTTAAGTCTGGAAAAGAGGAATCTGCTACTGGTGTAACTTCTCTGAGTGAATTGAGTGGGGGACCATCAATTGACAATGACAAGGATGAAGATGATGGATTAGATGCTGATTTGGCTAGTGAGTCTGTTTCTAATGTTGAGACACTGCCTTTGCCGCCACTGTTGCAGTTGCCTCCTTCATCCGGAACAATTGGTGTGCCGGAGCCGAGTGTTTCCCACCTTTTTTCTGTGTATGGATTCTTAAGATCCTTCAGCACAAAATTGTTTCTTCATCCCTTTTCTTTGGATGAATTTGTTGGTTCCTTGAATTGTCAAGTCTCCAACACTTTGATTGATGCCATTCACTTTTCGCTAATGCGGGTGTTAAGGCATCATCTGGAAACATTGTCATCTGAGGGATCTGAGCTTGCATCCCAATGCCTTAGGTGCAATGATTGGAGCTTGCTTGATACATTGACTTGGTCCGTTTTTGTGATCCTCTATTTGGTGGTTAAAGGGTACACGAAAGGACCTGAATGGAAGGGGTTCTACGATGATGTTTTTAGCGGGGAATATTATTTGTTGCCTGTAAGTAGGAAGCTAATGATACTCCAAATTCTTTGTGACGATGTTTTGGAATCTGAGGAGCTAAAAACTGAAATGAACATGCGAAAGGAATCAGAGGTCGGTATGGATTATGATGCAGAAGATATCCTTCCTGCAGAAATGGGACCCAGAAAGGTTCATCCAAGATATGCCAGGACCTCTTTTTGTGAGGATAAAGAAGCTGTCAAATTGGTTTCAGCATCAAATGCTGTGAACCAACCTAGTAACTCTATTTCATATTGCAGAGATACAGAAAGCACTGGGGATGGGGATTTTGATAGAAATGGTGATGAATGTCGCCTCTGTGGTATGGATGGAACCCTTCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGATTAAAAGTTATATACCAGAAGGGCCATGGTATTGTCCAGAATGCAAAATCAATATGACTGGGCCCACAATTGCAAAGGGAACCTCGCTTAGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAGCTCTTCATGGGTACATGCGACCACTTGCTTGTGCTTAACATTGGCAACAATGAAGATTGTCTTAGATATTACAATCAGAAGGACATCCCTAAAGTTGTCCAACTGCTTTGTGAATCCACGCTGCATAGGTCAATGTACTATGGTATTTGCATGGCAGTGCTACAATACTGGAATGTTTCAGAAAACTTGTTACCTCTTCTTGCTTCAACTGAAACAAATATGAAGGATGAGACAGAAGTTTCTGCCCCTTTACTTCCTCCTCCAAGTGAAGACAACCATAAACCTGTTAGTTTGGTCAAGGGAGAGAATTCTCCAACCACTGCGAGTTTGATTCACAATGATAATATGGTGCCTTCTCTTGATGCTTTGCAAGTTAGCACTCAAAGTCCTGCTCTTCATAGCAGTGGCATTGCTACGAGTGAAGAGGGCCTTACTGTGGTTAATAACATTGCTGCGGAAACTAGGATAGAGGCAATAATTTCAGCTGGTTCTGTTAGCCATCAGTCTGACCTGAACTTGCAGAACTCTGTCAATATGTCAACTACAGTAGATGCTGCTAAGTGCTCTTTGGTGAAAAGTCAATTAAGTAATTGCGGCCATGCAAATGATATGGGGTTgcctttgaatttttctttgctAAACAAAGAAAACACCTCAGTAGGCTTTGGAAAGTGTGAAAACAATGCAAATGatgatttttgttattttggtttCTCCTATAAACCTTCATCATACATAAACTGCTATATGCATGGTGAATTTTCTGCATCAGCAGCTGCCAAATTTGCCATGATTTCTTCAGAGGAGTCTAGGTCAGAAGGTCATGCATCAGATAGCCATAAAAAAACTGTATCTGCATATACTTACTTGCAAGCAAAAGCATTCTCACTAGCAGCATCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCCGTGGAGGTTCCAAGAGAGAGGTGTGGTTGGTGCATTTCCTGTAAAGCCAATGTTGCTAGCAAGAGAGGGTGCATGTTAAATCATGCTCTTATAAGTGCCACAAAAAGTGCCATGAAAATCCTTCCTAAATTTTCTCCTTTAAGGAGTGGAGATGGAAGTTTTCCTAGCACCATTGCAACATACATTTTATATATTGAGAAATGTTTACATGGTTTAGTAGTTGGGCCCTTCATAAATGCAAGCTATAGAAACAACTGGCGTAAGCAAGTGGAACAGGCCACAACACTTGGTGCTCTCAAGCCACTTCTACTTAAAcTTGAGGAGAACATTAGAACCGTTGCTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATCGGTTGGTTGAGTTTTCCATTATACAAAGTGGCACATCTACTCAAGGAACATCTCAGAAACGTGCACCAAGTGGGAGGCGTTATAAAAAGAGGTCATCTATTGATGAGGCTATAGATGATAGTTCCCAGGAAGGCATGTGGTGGCGCGGTGGCAAAGTTACCAAATTTATATTTCAGAATGTAGCTTTGCCAAAATCCATGGTCAGAAAAGCAGCTCGCCaagGTGGTTCGAGGAAAATTTCGGGTATTATCTATGCCGATGGCTCTGAAACTCCCAAAAGAAGTAGACAGCTTGTTTGGAGAGTCGCAGTTCAAATGAGTAGAAATGCCTCACAGCTGGCACTCCAGGTCAGATACCTAGATTATTATCTTAGATGGAGTGATCTGATTCGTCCAGAGCAGAACATACAGGATGGGAAAGGTCAAGAGACCGAAGCTTCTGCTTTCCGAAATGCGaatatttgtgataaaaaaCTCGTTGATGGAAAAATTTGTTATGGAATAGCTTTTGGGAGCCAAAAGCATCTTCCTAATAGGGTGATGAAAAGTGTTGTTGAAAAAGAGCAAATTTcagaaggaaaagaaaagtaTTGGTTTTCTGAAACTAGAATTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTAATGAAAAGGTTCCATGTCAAGAGCACTATAGTGGTGCATCTCCGTTGAACAGAAGGCGGTTGAAAGGTACCTGCAGTGACATACTCTTTTACCTTCGTTGCAAGAGAGACAACTTGGCATTCTCATGTTCTTCATGTCAGATGGGAATTTCAATCCGGAATGCTCACAAGTGTAATGCATGTCAAGGTTATTGTCACGAGGACTGTTCCATAAGTTCAGTTTCTATACTCTCTACAAATGGGGAAGTTGAGCGCTTGACCACATGCAAACAATGTCACCGTGCCAAGTTACTTGCTCCAAACATAATTAGTGATGAATCTCCAACCAGTCCTTTAATCTTACAAGGACAGGAAAACAGCTCTGGGACTATTTTCAAGGGACCTAGGCCAAAGGCTGGTCATTCTGACACGAAACAAGTTAATTCCATGTCAGTTTCAAAAGGATCGAAGCGTAAATGTCCTGATCAAACTGTGAGTTCTACCAGGAAAATAAAAGGTCATTCTGATGCCAAACAAGCTGTGTCTGATTCCACCAAAGTGGAATCAAGCAACCGTCGCAACAATAATTGTTCTTGGGGTCTTATATGGAAAAATAGAAGTAATGAAGAAAGCACTGATTTTAGGATAAACAACATACTTTTAAAGGGAGGATCAAACATGCCGGATCTATCTCCTGTTTGTAACTTATGTACAAAGGCATATAGGGATGATCTAATGTATATTCGCTGTGAGACATGCCAAAATTGGTTTCATGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCGACTTTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTGTGTCCGTACGCAGAGCCAAAACCTATGTCAGAAGTTAAGAAATCACGCAGACGAGCTTCAAAGAAAGAACAGTCTGGAGCCAATTCTGATTCCGGAACATTCAATGATATCAGAGATTCTGAACCTGATACTCCTGTCTTTCCTGTGGAGAGTGATCCTTTACTTTTTTCTCTTGCAAATGTTGAGCTGATTACAGAATCTAATAAATTAGATTTGGGTGTTCAGTGGAACACTGCCTCTGTGCCAGTGCCTCAGAAATTGCCAGTTAGAAGGCATGTTAAGCATGAGGGGGATGATGATGGTTCTGTTGCAGGAATTCCTTTACAGGCTGAATTTTCAGCACACTGTGAAGCAGGTTATCTGTCCAATCCTGCAGATTCGGAACTACCTTTAGAATACGACTCTGCTATTTTTGACAGCAATCTGCCGAACAACTATGAGTTTGGAAATGATCAATCTTTTGATGATGACAACAACAATCCCAATCTCTATTTCGATCCAAATGAACTGCTATGCACAGATGACGGCCAGATTGATGAAGGCCAGATTGATGAAGGCCTGATTAATGAAGGCCAGATTAATGAAGGCCAGATTAATGAAGGCCAGATTGATGGAGGTGATTTGTCTATGGATTTGTTGAAATATGATATCGAGAATTCTGGTGCCGCTGTTCCTGAAGAATTTGGAGACTTTGGAGATTTTGGagattttggagaatttgaacACAACGTTTATTGCAATATATGCTTACAAAATGTACCAGGTCTCGATCGTTTTTGTGAGACATGCGGAGTTTTGTGTCACAGCAGTTGTTTGCCTTGGCCTGAACCAGTTACTTATGTTGAAAAGTGGAAGTGTATGAATTGCCGGGATTGGCAATAA 5142 0.41 MEKTNGRSRGRPKKRRKEDEKEGKTVADAKRQPLEVAKPIALVGRFVLKEFPENGIFLGKVVYYDSGLYRVNYEDGDFEDLESGEIRPVLIRDEDFDAGLVRRRSKLEKLVAKKSAKVADVADEGLVKSGKEESATGVTSLSELSGGPSIDNDKDEDDGLDADLASESVSNVETLPLPPLLQLPPSSGTIGVPEPSVSHLFSVYGFLRSFSTKLFLHPFSLDEFVGSLNCQVSNTLIDAIHFSLMRVLRHHLETLSSEGSELASQCLRCNDWSLLDTLTWSVFVILYLVVKGYTKGPEWKGFYDDVFSGEYYLLPVSRKLMILQILCDDVLESEELKTEMNMRKESEVGMDYDAEDILPAEMGPRKVHPRYARTSFCEDKEAVKLVSASNAVNQPSNSISYCRDTESTGDGDFDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVIKSYIPEGPWYCPECKINMTGPTIAKGTSLRGAEIFGKDLYGQLFMGTCDHLLVLNIGNNEDCLRYYNQKDIPKVVQLLCESTLHRSMYYGICMAVLQYWNVSENLLPLLASTETNMKDETEVSAPLLPPPSEDNHKPVSLVKGENSPTTASLIHNDNMVPSLDALQVSTQSPALHSSGIATSEEGLTVVNNIAAETRIEAIISAGSVSHQSDLNLQNSVNMSTTVDAAKCSLVKSQLSNCGHANDMGLPLNFSLLNKENTSVGFGKCENNANDDFCYFGFSYKPSSYINCYMHGEFSASAAAKFAMISSEESRSEGHASDSHKKTVSAYTYLQAKAFSLAASRFFWPSSEKKPVEVPRERCGWCISCKANVASKRGCMLNHALISATKSAMKILPKFSPLRSGDGSFPSTIATYILYIEKCLHGLVVGPFINASYRNNWRKQVEQATTLGALKPLLLKLEENIRTVAFCGDWVKLMDDRLVEFSIIQSGTSTQGTSQKRAPSGRRYKKRSSIDEAIDDSSQEGMWWRGGKVTKFIFQNVALPKSMVRKAARQGGSRKISGIIYADGSETPKRSRQLVWRVAVQMSRNASQLALQVRYLDYYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDKKLVDGKICYGIAFGSQKHLPNRVMKSVVEKEQISEGKEKYWFSETRIPLYLVKEYEEGNEKVPCQEHYSGASPLNRRRLKGTCSDILFYLRCKRDNLAFSCSSCQMGISIRNAHKCNACQGYCHEDCSISSVSILSTNGEVERLTTCKQCHRAKLLAPNIISDESPTSPLILQGQENSSGTIFKGPRPKAGHSDTKQVNSMSVSKGSKRKCPDQTVSSTRKIKGHSDAKQAVSDSTKVESSNRRNNNCSWGLIWKNRSNEESTDFRINNILLKGGSNMPDLSPVCNLCTKAYRDDLMYIRCETCQNWFHAEAVELEESKISTLLGFKCCKCRRIKSPVCPYAEPKPMSEVKKSRRRASKKEQSGANSDSGTFNDIRDSEPDTPVFPVESDPLLFSLANVELITESNKLDLGVQWNTASVPVPQKLPVRRHVKHEGDDDGSVAGIPLQAEFSAHCEAGYLSNPADSELPLEYDSAIFDSNLPNNYEFGNDQSFDDDNNNPNLYFDPNELLCTDDGQIDEGQIDEGLINEGQINEGQINEGQIDGGDLSMDLLKYDIENSGAAVPEEFGDFGDFGDFGEFEHNVYCNICLQNVPGLDRFCETCGVLCHSSCLPWPEPVTYVEKWKCMNCRDWQ 1713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 133 147 - -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 1429 1444 - -
Tsu02g03715 1713 ProSitePatterns Zinc finger PHD-type signature. 420 461 IPR019786 -
Tsu02g03715 1713 Pfam DDT domain 196 250 IPR018501 -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 938 959 - -
Tsu02g03715 1713 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1710 - -
Tsu02g03715 1713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 411 466 IPR013083 -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 1275 1295 - -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 1296 1314 - -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 1248 1264 - -
Tsu02g03715 1713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1361 1420 IPR013083 -
Tsu02g03715 1713 CDD PHD2_CHD_II 420 461 - -
Tsu02g03715 1713 PANTHER PHD FINGER FAMILY PROTEIN 1 1710 - -
Tsu02g03715 1713 SUPERFAMILY FYVE/PHD zinc finger 408 467 IPR011011 -
Tsu02g03715 1713 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 298 341 IPR028942 -
Tsu02g03715 1713 ProSiteProfiles DDT domain profile. 194 254 IPR018501 -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 1 30 - -
Tsu02g03715 1713 SMART testlast3 194 254 IPR018501 -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 1426 1463 - -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 132 161 - -
Tsu02g03715 1713 SUPERFAMILY FYVE/PHD zinc finger 1362 1422 IPR011011 -
Tsu02g03715 1713 ProSiteProfiles Zinc finger PHD-type profile. 417 464 IPR019787 -
Tsu02g03715 1713 SMART PHD_3 1366 1414 IPR001965 -
Tsu02g03715 1713 SMART PHD_3 419 462 IPR001965 -
Tsu02g03715 1713 SMART PHD_3 1182 1233 IPR001965 -
Tsu02g03715 1713 SMART PHD_3 1665 1710 IPR001965 -
Tsu02g03715 1713 Pfam PHD-finger 420 462 IPR019787 -
Tsu02g03715 1713 SUPERFAMILY FYVE/PHD zinc finger 1658 1710 IPR011011 -
Tsu02g03715 1713 CDD PHD_TCF19_like 1366 1413 - -
Tsu02g03715 1713 MobiDBLite consensus disorder prediction 1248 1326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03715 Tsu-Chr2 41987444 41998036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03715 284 563 EF-hand Containing Proteins AT5G22760 49.825 6.47e-80 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tsu02g03715 DDT 4.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03715 - - mtr:MTR_4g055920 2152.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03715 02 41987444 41998036 Tsu02g03715 02 41987444 41998036 ECH