Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03693 ATGTCTCGCCGCGGTGGAGGTAACCATTCTGATAACCGCCGTAACCAACCACAACCATCACCGGCTTTGTCTCATCAATCTGCTGTCAATGCTGCCGGAAGAGGCCGTGTTGGTGGTGGTCGTGGCTCTCACGGTGGACATActgtttcatcttcttcatcgcCGTCCGTACAGCCTCCGGCTTCTTCTCCGTCACCGATCAACACCGCTGCTTCATCTATCGTAGCGCCGGTTGTTCATCATCCTGTTCATCCATCCGTTGCTGCTCCGAGTGCCGGCTCTAGTTCGGTTCCGACTCTTCCTTCTCCGGCGACGGTTTCAACCGAAGCTCTGACTTCTGAAGTTCAACAGAAGCTTTCTCTACAGTCGGCTTCCGCTCCGGCGTCTCAGAAGGCGGTCAGGTTTCCTAACCGTCCTGGTTATGGTCAACTAGGGAGAAAAGTTCAAGTTCGTGCTAATCACTTTCAGTTGAAAGTTGCTGATAAGGATCTACATCACTACGatGTGTCTATTGCACCGGAGATTACTTCAAAAAAAGTGTCTAGAGATATTATCAATCAGTTGGTTAAAATGCATCGGGAGTCACTGTTAGATAATCGCATTCCTGCTTATGATGGTAGGAAGAGTCTGTTTACTGCTGGTCCATTACCGTTTACTTCTAAGGTTTTTGTGGTTAACTTGGCTGATGAGGATCGAGGATCCTCTTCTGATTCTGCTAGGAAAAAGCGTGAACGGGAGTTTAAGGTTACTATCCGGTTTGCTTCAAAGACGGACCTTGTCCATCTTACTCAGTTTCTCCGTCGTTTGCAGCCAGATTGTCCTTATGAAACCATACAAGTTCTTGATGTTGCTTTGAGGGCGACTCCAGCTGAAATGTACACTGTTGCAGGGAGGTCATTTTTCTCACCCAATTTGGGGGCACCTGGGCCTCTTGGTGGTGGGACAGAATATTGGAGAGGCTTTTATCAAAGCCTTAGGCCAACACAAATGGGGCTGTCACTCAACATTGATGTATCTTCGAGGGCCTTCTATGAACCGGTTCGTGTGACTGAATTTATTTCTAAacattttaaattgaattttacaAGGCAGCTCTCTGATCAAGATCGTCTCAAGATCAAGAAAGCCTTGAGAGGTCTTAAGGTACGACTATCTCATGGAGTGGGAATGAGGAGTTGCAAGGTGACTGGTCTCTCAAAAGAGCCACTGAAAGACCTAACGTTCACACTAGAGGACAAAGTAACTAGGAAAAAAGTTCTGGATTATTTCCGTGAGAAATACAATATTGAGTTAAAGTATCCACTTCTTCCTGCTATCCAATCTGGAAGTGATGCAAGACCTATGTATTTTCCAATGGAGCTTTGTCAAATTGAGGCTGGACAGAGGTACTCCAAAAGATTGAATGAAGAGCAAGTAACTAATCTTCTAAGGGCCACCTGCCAGCGTCCTCACCAGAGAGAACAAGATATTAGAAATATTGTGAAGCAGCACCGCTTCAACTCAGACAAGGTTGCGCAGGAATTTGGAATCAATGTAAGAGAGGATCTCGCTATGGTTGATGCCCGTGTTTTGCCACCCCCAACGCTCAAATATCATGGAACTGGAGGAGAATCAAAACTTGACCCTCGAATGGGTCAGTGGAATATGATCAGTAAGAAAATGGTTGATGGTGGCAAGGTTCAATTTTGGAGTTGCATTTGCTTTTCAAAAATGGACCCAACTCAGTTTTGCCAAGAGTTAGTTAATATGTGTCAGGCCAAGGGACTGGTTTTCAACCGAGATCCTGTAGTAACTATATCCCCAGGCAATCCTAATCAAATTGAGAGCACGCTCGTGAATTTTAACAAGCAGTGTAGGGCAATACTTGATAGCAAACAGCAGAGGCTTCAGTTGCTGATAATAATTATGCCTGATTTCAAGGGTGTGAGGACTTATGATAAAATAAAGCGTGTATGTGAAACCGAACTGGGAATTGTTTCTCAATGTTGTCAGCCAAGGCTAGCGCAAAAGATGCAAAAGCAGTATCTTGAAAATTTGGCTTTAAAGATTAATGTCAAGGTTGGGGGTCGTAACACTGTGCTGAATGATGCATTTGAGAGAAGAATTCCGCTTGTAACTGATAGACCAACTATAATATTTGGTGCAGATGTAACACATCCACAGCCAGGGGAAGACTCAAGCCCCTCTATAGCTGCAGTGGTGGCATCCATGGATTGGCCTTGGGTCACCAAGTACAGGGGAGTTTTTTCTGCCCAGTCTCATCGGGAAGAAATTATTCAGGATCTGTATAAAACTGTAGTTCATCCTCAAAAGGGGATTTTACACAGCGGCATGATAAGGGAGCTAATTGTGTCTTTCTATAAGTCAACTGGTCGTAAGCCTGAGAGGATTATATTTTACAGGGATGGAGTAAGTGAAGGGCAGTTTAGTCAGGTTTTGCTTTATGAGGTGGATGCAATAAGAAAGGCTTGTGCATCGATAGAGAATGGGTATCTACCTCCAATTACTTTTGTGGTGGTCCAAAAGAGACATCATACCCGCCTCTTTCCTGTTGGTGGTCCAAAAGAGACAGACAGAAGTGGCAATATAATGCCagGAACTGTGGTAGACACCACCATTTGCCACCCCAGagaatttgatttttatctGAACAGCCATGCTGGGATTCAAGGGACTAGTCGACCAGCTCATTATCATGTGTTGTTTGATGAAAATAGATTCACTGCAGATCAGTTACAGAGTTTGACCAATAATTTGTGTTACACttATGCTAGATGTACTCGATCAGTGTCAATAGTTCCTCCTGCTTATTATGCCCACTTGTTAGCTTTCCGAGCTCGCTACTACCTTAGTGATGCTGCTGATACTTCTGATTCTGGTTCTGCAAGTGGTACTAGGAGTACAACCAACGTTGTGGCGGCACTTCCCTCGATCATTGAAAGCGTCAAAGATAACATGTTTTATGTTTGA 2970 0.438 MSRRGGGNHSDNRRNQPQPSPALSHQSAVNAAGRGRVGGGRGSHGGHTVSSSSSPSVQPPASSPSPINTAASSIVAPVVHHPVHPSVAAPSAGSSSVPTLPSPATVSTEALTSEVQQKLSLQSASAPASQKAVRFPNRPGYGQLGRKVQVRANHFQLKVADKDLHHYDVSIAPEITSKKVSRDIINQLVKMHRESLLDNRIPAYDGRKSLFTAGPLPFTSKVFVVNLADEDRGSSSDSARKKREREFKVTIRFASKTDLVHLTQFLRRLQPDCPYETIQVLDVALRATPAEMYTVAGRSFFSPNLGAPGPLGGGTEYWRGFYQSLRPTQMGLSLNIDVSSRAFYEPVRVTEFISKHFKLNFTRQLSDQDRLKIKKALRGLKVRLSHGVGMRSCKVTGLSKEPLKDLTFTLEDKVTRKKVLDYFREKYNIELKYPLLPAIQSGSDARPMYFPMELCQIEAGQRYSKRLNEEQVTNLLRATCQRPHQREQDIRNIVKQHRFNSDKVAQEFGINVREDLAMVDARVLPPPTLKYHGTGGESKLDPRMGQWNMISKKMVDGGKVQFWSCICFSKMDPTQFCQELVNMCQAKGLVFNRDPVVTISPGNPNQIESTLVNFNKQCRAILDSKQQRLQLLIIIMPDFKGVRTYDKIKRVCETELGIVSQCCQPRLAQKMQKQYLENLALKINVKVGGRNTVLNDAFERRIPLVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPWVTKYRGVFSAQSHREEIIQDLYKTVVHPQKGILHSGMIRELIVSFYKSTGRKPERIIFYRDGVSEGQFSQVLLYEVDAIRKACASIENGYLPPITFVVVQKRHHTRLFPVGGPKETDRSGNIMPGTVVDTTICHPREFDFYLNSHAGIQGTSRPAHYHVLFDENRFTADQLQSLTNNLCYTYARCTRSVSIVPPAYYAHLLAFRARYYLSDAADTSDSGSASGTRSTTNVVAALPSIIESVKDNMFYV 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03693 989 MobiDBLite consensus disorder prediction 45 69 - -
Tsu02g03693 989 Pfam Argonaute linker 1 domain 297 345 IPR014811 -
Tsu02g03693 989 Pfam N-terminal domain of argonaute 146 285 IPR032474 -
Tsu02g03693 989 SUPERFAMILY Ribonuclease H-like 619 952 IPR012337 -
Tsu02g03693 989 Pfam PAZ domain 368 476 IPR003100 GO:0005515
Tsu02g03693 989 MobiDBLite consensus disorder prediction 89 111 - -
Tsu02g03693 989 PANTHER ARGONAUTE1 30 970 - -
Tsu02g03693 989 SMART DUF1785_2 294 346 IPR014811 -
Tsu02g03693 989 CDD PAZ_argonaute_like 346 457 - -
Tsu02g03693 989 Pfam Piwi domain 632 949 IPR003165 GO:0003676
Tsu02g03693 989 CDD Piwi_ago-like 503 950 IPR045246 -
Tsu02g03693 989 SMART Piwi_a_2 631 951 IPR003165 GO:0003676
Tsu02g03693 989 MobiDBLite consensus disorder prediction 121 140 - -
Tsu02g03693 989 MobiDBLite consensus disorder prediction 1 69 - -
Tsu02g03693 989 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 30 970 - -
Tsu02g03693 989 MobiDBLite consensus disorder prediction 11 27 - -
Tsu02g03693 989 Pfam Mid domain of argonaute 542 615 IPR032473 -
Tsu02g03693 989 Gene3D - 702 989 IPR036397 GO:0003676
Tsu02g03693 989 MobiDBLite consensus disorder prediction 86 111 - -
Tsu02g03693 989 Gene3D paz domain 341 463 - -
Tsu02g03693 989 ProSiteProfiles Piwi domain profile. 631 951 IPR003165 GO:0003676
Tsu02g03693 989 Pfam Argonaute linker 2 domain 485 531 IPR032472 -
Tsu02g03693 989 SUPERFAMILY PAZ domain 147 500 IPR036085 GO:0005515
Tsu02g03693 989 ProSiteProfiles PAZ domain profile. 347 459 IPR003100 GO:0005515
Tsu02g03693 989 Gene3D - 523 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03693 Tsu-Chr2 41664232 41670417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03693 77 988 Eukaryotic Initiation Factors Gene Family AT1G48410 56.131 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03693 K11593 - gmx:100799033 1193.33