LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g03689	ATGGAATTAATTACAACACCACCATGGCTGGAACAATTGTTGTCAACCACATTCTTCTCTGCTTGCAAAGCTCACATCAAAGCACCAAGGAACGAATGCAACATGTATTGCCTTGATTGTAGAGAATCATTCTGTTATTATTGTAGACAAGCTTGGCATAATGATCATCAAGTAATTCAAATAAGGAGGTCGTCTTATCATGATGTTGTGAGGGTAGCTGAGATTCAGAAGACATTGGATATTAGTGGAGTTCAAACATATGTGATTAATAGTGCTAGAGTGATTTTCCTTAATGAGAGGCCACAAAATCAGATTAAGACAAGTAATGGTGCTATTAGTGGGAGTAAAACCAATTCACATTTGTGTGAAATATGTACAAGATATCTATTGGACCCTTTTCGTTTTTGTTCTTTGGGTTGCAAGCTTGTAGGAATAAAGAAAAATGGGAATGCGAGCTTTGTCTTAAGCACAAAGAAAGACGAAGAAATAGGGAAAATGCATCAAGGAAGGTTGCTATCAAAGGAAGAAGACGaagaaatattattatcaatGCGTGAAGGAATCCAAAAACAAGTTTACAAAAGCACGTTTTCTCCTTATTGTTCTCATTCATCTCAACAAGCTTTTTCAAATTCAAGGAGAAGAAAAGGAATACCTCATAGGGCACCTTTAGACACTACGACGGAGAGTATATTGAGAACACCTGTGTTTGAGGAGGTGAAAGAAGACCAGTTAGTGTGGCAATATGAAAATCATGGCAAGTATACAGTGAAATTCGGTGAAAGTAGAAGTGTGTGGAACGAAGCCGGATTGAGAGGAGTTATTGAACCAAGAGTGCAACAACTCAATAATGTGCATAATGCATTTTTTGATATATGCAGAAATGAAACCTTTGATGTTGTAGGAACTGTCGCGATGATTGCATGGTGCATATGGAATAACCGGAACAATTGTGTGTGGAATGGCCTCAAGGACACACCAAAGTGTGTTGCTATGCATGTTGCACATGTGATGAATGAATGGCGGGCTGTCAACATAAGACAGCAGTTGCGCCAAACAGAAGACAACAACACAACTGGTATACAGTGGCAACAGCCCCGTTCCGGATGGTcgaaatgtaatgttgatgcgAGCTGCCATTATGAATCTGGCCGTACGGGATGGGGGTGGTGTTTTCGTAATTCCCACGGTGCTTTTATTGCCGCATGTACAAATGTGAGTATGCATAAATTCTCTACTTTGGAAGGCGAAGCCATGACCTTATTGGAGGCAATCCGTGAAGCCTCTTTTAGAGGATGGTCCAACATTGTCTTTGAAAGTGACTCCAAAATTGTGGTGGATGCCTTACAAACCAATCACACAGGCGTATCGGAATTGAGCTCTATTTTTATGTCGATTAAGTCTTTGTTACATTGTAATTCGAACTTTGAGATTAAGTTCATTAAGCGACAAGCGAATATGGTGGCTCACACTTTAGCTAGAGCGGTCATTTCTTGGTCTAGTCGCAAACTCTTTGATTATGTCCctctttaa	1533	0.3907	MELITTPPWLEQLLSTTFFSACKAHIKAPRNECNMYCLDCRESFCYYCRQAWHNDHQVIQIRRSSYHDVVRVAEIQKTLDISGVQTYVINSARVIFLNERPQNQIKTSNGAISGSKTNSHLCEICTRYLLDPFRFCSLGCKLVGIKKNGNASFVLSTKKDEEIGKMHQGRLLSKEEDEEILLSMREGIQKQVYKSTFSPYCSHSSQQAFSNSRRRKGIPHRAPLDTTTESILRTPVFEEVKEDQLVWQYENHGKYTVKFGESRSVWNEAGLRGVIEPRVQQLNNVHNAFFDICRNETFDVVGTVAMIAWCIWNNRNNCVWNGLKDTPKCVAMHVAHVMNEWRAVNIRQQLRQTEDNNTTGIQWQQPRSGWSKCNVDASCHYESGRTGWGWCFRNSHGAFIAACTNVSMHKFSTLEGEAMTLLEAIREASFRGWSNIVFESDSKIVVDALQTNHTGVSELSSIFMSIKSLLHCNSNFEIKFIKRQANMVAHTLARAVISWSSRKLFDYVPL	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g03689	510	SUPERFAMILY	Ribonuclease H-like	371	498	IPR012337	-
	Tsu02g03689	510	CDD	RNase_H_like	373	494	IPR044730	-
	Tsu02g03689	510	PANTHER	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	5	225	-	-
	Tsu02g03689	510	PANTHER	PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN	5	225	-	-
	Tsu02g03689	510	Pfam	Reverse transcriptase-like	374	495	IPR002156	GO:0003676\|GO:0004523
	Tsu02g03689	510	Pfam	PLATZ transcription factor	62	142	IPR006734	-
	Tsu02g03689	510	Gene3D	-	371	501	IPR036397	GO:0003676
	Tsu02g03689	510	SUPERFAMILY	B-box zinc-binding domain	29	63	-	-
	Tsu02g03689	510	ProSiteProfiles	Zinc finger B-box type profile.	22	61	IPR000315	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g03689	Tsu-Chr2	41596659	41600460	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g03689	307	497	Glycoside Hydrolase	AT2G33160	27.041	6.42e-10	59.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	PLATZ	Tsu02g03689		RVT_3	9.8e-24	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g03689	-		-	aprc:113859745	347.051