Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03687 atgggaCTCTACAATCGCAGGTTGCTCTTACTGCACGAGGATCTTCCAATCTCAAAATCCACATCCATATCACCTTTCCCTCAAATCCAACCAAACGGATCCTCACCGTCCATTTCAATAacaccatcatcatcaccatccaAAACATTCACACCACATTTACAATTACAATTACCATTTCATCCAATTTTCTCATCAAACATAGCCTACACTTTCCTCCTTCTTTTCTCCActcttttcttcatcttcttcattctcttATCAATCCGTGAACTCTCAAACCGTCGCCGCCGTGGTATTCCGCCGTTAAAAGGTTTAGATCTCGCCACCGTGAAGTCACTGCCGGTTTGTGAGTATAAAGAAGATGTGAAGCAGCCGGATTGTGTGATTTGTTTGGAAGAGTTCGGAGAGTGTGATGCCGTGAAGATGATTCCGTTTTGTAAGCACGTGTTTCATCCTGAATGTATTGACACGTGGCTTTCTAAGCACGTGACGTGTCCTATTTGCAGGTGTGTTATTATGAATGAACATGTTGGGATAAGATCAACGGTGGAGAATGAAGGTTGA 567 0.3898 MGLYNRRLLLLHEDLPISKSTSISPFPQIQPNGSSPSISITPSSSPSKTFTPHLQLQLPFHPIFSSNIAYTFLLLFSTLFFIFFILLSIRELSNRRRRGIPPLKGLDLATVKSLPVCEYKEDVKQPDCVICLEEFGECDAVKMIPFCKHVFHPECIDTWLSKHVTCPICRCVIMNEHVGIRSTVENEG 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03687 188 Pfam Ring finger domain 127 170 IPR001841 -
Tsu02g03687 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 175 IPR013083 -
Tsu02g03687 188 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Tsu02g03687 188 SUPERFAMILY RING/U-box 112 175 - -
Tsu02g03687 188 MobiDBLite consensus disorder prediction 22 45 - -
Tsu02g03687 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 180 - -
Tsu02g03687 188 CDD RING-H2_PA-TM-RING 127 170 - -
Tsu02g03687 188 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03687 Tsu-Chr2 41554871 41555526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03687 64 170 C3H Transcription Factor Family AT2G27940 37.956 5.16e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03687 - - mtr:MTR_4g056590 250.366