Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03686 ATGGCTATTGCTGGTTTGCACAGTGTGTCTGTGCTTGACTCATCTTTTTTGAGGGACCCGCAGTCTCAGGCGTCTAGAAGAAGGGGAGATGGAAGGAGGGGAAGCACCCAGTCGTCTTCACTTTTGCAAATGTGGCgagagattgaggatgagcatTCGGTGagtcaagttcaagcaagaCCTGGTGAAGTACTACTTGAACAACCGAACAATGGGTCGGTTGGGGATCTTTCACTTGAAGATACACCTGATACACCCGAGATAGTAGAAAGACATGATTTAGAAGATGCTGTTTTGGGTGAGACTGAGTCGGAGACATGGTCACAGTCGCAAAGTCAGTCTGAATCGCATGATGGTCATGAGGATTTAAACAATTCTAGCTGTGAAAACTCGTCTGTTTTCGGAGAAGGTGAAAGGGAAAGAGTAAGGCGAATTTTCAGGGAATGGATGAGTAATGGATCTAGGGATCGTGGATCAAACATTTCCCGAAGAAGTAACAGTCCAAGGGGAGAATGGCTTGGAGAAACCGAACAGGAAAGGGTGAGAGTTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAGTGTTTCTTCTGCCGAAAACACGGAACAACCGTGTGCAGAAATTGGTACACAAATCGAACGTGTGCGTGATGGACTTGTTGTTAACCACAGTGAGGGCCAAAATGAACATATAAGGCGCGGTATGCGTAAATTACGTGGAAAACAGGTTATGCTTGATATGCTTAAGAAAGCTGAGAGGGAAAGGCAGAGAGAAATCCAGGAGTTGCTGGACCATCAGGCTGTATCACATTTTCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGATCTGTTGATCAAAACAGGTCCACATCTGTAGCAGAAAGTGAATTAGGCTTATTGAGGCAACGACAAACTGTATCAGGTCTAAGAGAAGGGTTCTTCTCTAGAATGGACAATACCAGTTGCAGTCAAGCAACCAGCAACCTATCTGATACCTCATCAAACATTGATATTGATTTTAATACAAATGAACAAACTGGAGAAAGCAGTTCATGTTTGGTCATTGATCCTAATAACAGAAGTGATAATAGAGTTGGGGTATCTGGTGGCCCATGTCTAGAAGGAACTACATGTGAGAGTTTAGATTGTCAAGGATCTACCTCCCATGCAGAAGGAAATCGGTTGCAGTGCTTGCAAATTGAATCAGTAGATAGTCAGTCATCATCTAGTGTTGGATATGAGAGAAGAGATGACATTGGGCAAAATGTTGATGTGATGGAAATCAGAGATACTGCCAATGAACTTATCCAACACAGCTTACGAATTGGTGATTCAGACCATAGTAATAATCAGGAATCCAGCGAGGTACCTAATGAGCAACCTGAGCTGGGTGATATAAGTAATGGTGAAAATGATTTACTAAATCACAATGATTATGCGGAGAGCAATGTTGTCGATGATGTTAGTTATGGACCTGATGCTCTAGAAGAACTGCCGGAAGAAATTGTTGAAAATGAAGGTAGTGGCTGGCATCAGAGTAACACTGAATGGATAAATAGCACTGATGAAAATGCGGATGATAATCAGCTCAGCAATACAGCAAATGAGTGGCCTGAAAACAGTTGGGCAAATGAGGATGGAGAAAACCCTCGTCTGCAAGAAGCTTCTGAAGTTTGGCAAGAGGATAGTGGCTTCCAAGAGGCCGTGGAAAATTGGTTGGGAGGACCTTCTGACCATGAAACTGCAGGTGGTAGAGTTCgtaatatttattttcctgATGATGACAATGTATACAGTGTTGAACTCAGGGAACTTCATAGTAGGAGACGTGTCTCTAATCTTCTTGGCAGTAGTTTCCGTGAGAGTCTTGACCAGTTGATACAATCATATGTCGAAAGACAAGGTCATGCTAACATGGAGTGGGATATGGAAGAAGGAACCCCTTTTGCTTCCTCTGCAGAACAAAACCTGGAGCAGCAGAGTAGAGATCATATTGTTGATCAGGAGGGCACTATTAATAGTCGACTTGACTTGCCCTCTTTGCCTAGACCTCCTCCCCTGCCTCTATGGGATCAGCATCCTCATGGTGATAACTGGCCACAAAATGATGATTTGGAGATTATCAATGACTTGAGACTTGACATGGCTAGATTACAGCAAAGGATGAATACTATGCAGAAGATGCTCGAAGCGTGTATGGATATGCAGCTTGAGCTTCAGCGCTCAATAAAACAAGAAGTTTCTGCAGCTCTAAATCGCTCAGCTGGTTCATCAGGAATACATGACTGCGATTCACCAGATGATATTTCTAAATGGGAATGTATGAGAAAAGGACTTTGCTGTATTTGCTCGGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACTTGTGCACATGCTCAAAATGTGCCAATGAGTTGCTTCAGAATAGAAGGAATTGCCCAATGTGTCAAGCCCCTGTCGTGGAGGTCATACGTACTTATTCTATACTATAA 2529 0.4243 MAIAGLHSVSVLDSSFLRDPQSQASRRRGDGRRGSTQSSSLLQMWREIEDEHSVSQVQARPGEVLLEQPNNGSVGDLSLEDTPDTPEIVERHDLEDAVLGETESETWSQSQSQSESHDGHEDLNNSSCENSSVFGEGERERVRRIFREWMSNGSRDRGSNISRRSNSPRGEWLGETEQERVRVIREWVQMSSQQRSVSSAENTEQPCAEIGTQIERVRDGLVVNHSEGQNEHIRRGMRKLRGKQVMLDMLKKAERERQREIQELLDHQAVSHFPHRNRIQALLRGRFLRNDRSVDQNRSTSVAESELGLLRQRQTVSGLREGFFSRMDNTSCSQATSNLSDTSSNIDIDFNTNEQTGESSSCLVIDPNNRSDNRVGVSGGPCLEGTTCESLDCQGSTSHAEGNRLQCLQIESVDSQSSSSVGYERRDDIGQNVDVMEIRDTANELIQHSLRIGDSDHSNNQESSEVPNEQPELGDISNGENDLLNHNDYAESNVVDDVSYGPDALEELPEEIVENEGSGWHQSNTEWINSTDENADDNQLSNTANEWPENSWANEDGENPRLQEASEVWQEDSGFQEAVENWLGGPSDHETAGGRVRNIYFPDDDNVYSVELRELHSRRRVSNLLGSSFRESLDQLIQSYVERQGHANMEWDMEEGTPFASSAEQNLEQQSRDHIVDQEGTINSRLDLPSLPRPPPLPLWDQHPHGDNWPQNDDLEIINDLRLDMARLQQRMNTMQKMLEACMDMQLELQRSIKQEVSAALNRSAGSSGIHDCDSPDDISKWECMRKGLCCICSESNIDSLLYRCGHLCTCSKCANELLQNRRNCPMCQAPVVEVIRTYSIL 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03686 842 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 841 - -
Tsu02g03686 842 MobiDBLite consensus disorder prediction 153 172 - -
Tsu02g03686 842 ProSiteProfiles Zinc finger RING-type profile. 790 829 IPR001841 -
Tsu02g03686 842 PANTHER PROTEIN, PUTATIVE-RELATED 1 841 - -
Tsu02g03686 842 MobiDBLite consensus disorder prediction 532 552 - -
Tsu02g03686 842 MobiDBLite consensus disorder prediction 532 557 - -
Tsu02g03686 842 SUPERFAMILY RING/U-box 789 836 - -
Tsu02g03686 842 MobiDBLite consensus disorder prediction 17 39 - -
Tsu02g03686 842 Coils Coil 718 745 - -
Tsu02g03686 842 Pfam Zinc finger, C3HC4 type (RING finger) 787 834 - -
Tsu02g03686 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 774 840 IPR013083 -
Tsu02g03686 842 Coils Coil 243 270 - -
Tsu02g03686 842 MobiDBLite consensus disorder prediction 452 485 - -
Tsu02g03686 842 CDD mRING-HC-C3HC5_NEU1 790 828 - -
Tsu02g03686 842 MobiDBLite consensus disorder prediction 100 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03686 Tsu-Chr2 41545140 41550250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03686 790 836 C3H Transcription Factor Family AT3G06140 40.426 4.89e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03686 - - gmx:100801329 1145.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03686 02 41545140 41550250 Tsu02g03686 02 41545140 41550250 ECH
Tsu02g04637 02 55369448 55376275 Tsu02g03686 02 41545140 41550250 ECH
Tsu02g04637 02 55369448 55376275 Tsu02g03686 02 41545140 41550250 PCT