Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03676 ATGGGAGAACTAGTTATGGAGGAACAAAAACTGATGGATTTTTCAAAGAAAGATTCAACTCATATTGCTAAAGGAAAACGCACCAAGAGGTTAAGACTTTTGTCTCCTTGTGGTGTTGTTTCTACTAGTATCACATCTagtgaagaaaatgattattttgatgatgagattgaagatgatgatgatgatgaacaagaTATGGCTAATTGTTTGATTCTCCTTGCTCAAGGAGGAAATCACAAGCAACATGGTGATGATGGCGATGGCGACGACGACAAGAAGAGGGAAAAGGGTAGcaatggaaataaaaaaattgctcaGATTGTAACCACAAAAGCTGGTTTGTATATTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCTTTGGGTGGTCATAGAGCAAGTCACAAAAAGCCCAAAATTATGGCTgaggagaaaaaagaaaaactaccaTCATCGCCACCGTCTTCAATCTCATCACATGATTCGCAGTCAGTTAAACTGGTTGCAAATCGTGATGAGATTGAAGAAGCTGAGAAACAACCTTGTGGTGGACCTACAATTTCTTTTCTAATTGGGAATCAAGGATTGAAAGCTATTAATGGGAACAAGGGTAAGATTCATGAGTGTTCTATTTGTGGATCAGAATTCACATCTGGACAAGCATTGGGTGGACACATGAGGAGACATAGGACATCCTCCGCGAAGGCATCTATCGCGGAGGAGAGAGGAGTTCGGCAACAAAATATTCTACAGTTTGATCTTAACCTTCCGGCTCCCGAAGAGGATCTTCGAGAATCAAAGTTTCAGTTTCCAGCTTCACAAAAATCTATGGTGATGTCTGCTGCTCCGGCTTTGGTGGGTTGTCATTATTAA 888 0.3626 MGELVMEEQKLMDFSKKDSTHIAKGKRTKRLRLLSPCGVVSTSITSSEENDYFDDEIEDDDDDEQDMANCLILLAQGGNHKQHGDDGDGDDDKKREKGSNGNKKIAQIVTTKAGLYIYECKTCNRTFPSFQALGGHRASHKKPKIMAEEKKEKLPSSPPSSISSHDSQSVKLVANRDEIEEAEKQPCGGPTISFLIGNQGLKAINGNKGKIHECSICGSEFTSGQALGGHMRRHRTSSAKASIAEERGVRQQNILQFDLNLPAPEEDLRESKFQFPASQKSMVMSAAPALVGCHY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03676 295 MobiDBLite consensus disorder prediction 141 155 - -
Tsu02g03676 295 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Tsu02g03676 295 Gene3D Classic Zinc Finger 115 234 - -
Tsu02g03676 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
Tsu02g03676 295 MobiDBLite consensus disorder prediction 75 105 - -
Tsu02g03676 295 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 5 295 - -
Tsu02g03676 295 MobiDBLite consensus disorder prediction 134 171 - -
Tsu02g03676 295 MobiDBLite consensus disorder prediction 156 170 - -
Tsu02g03676 295 Pfam C2H2-type zinc finger 118 143 - -
Tsu02g03676 295 Pfam C2H2-type zinc finger 212 236 - -
Tsu02g03676 295 SMART c2h2final6 212 234 IPR013087 -
Tsu02g03676 295 SMART c2h2final6 118 140 IPR013087 -
Tsu02g03676 295 MobiDBLite consensus disorder prediction 81 101 - -
Tsu02g03676 295 PANTHER ZINC FINGER PROTEIN ZAT5 5 295 - -
Tsu02g03676 295 SUPERFAMILY beta-beta-alpha zinc fingers 117 234 IPR036236 -
Tsu02g03676 295 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Tsu02g03676 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03676 Tsu-Chr2 41378128 41379152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03676 18 295 C2H2 Transcription Factor Family AT2G28200 41.083 1.64e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g03676 zf-C2H2_6 4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03676 - - cam:101512661 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03676 02 41378128 41379152 Tsu02g03676 02 41378128 41379152 ECH
Tsu02g03676 02 41378128 41379152 Tsu01g03947 01 47084248 47085349 ECH
Tsu02g03676 02 41378128 41379152 Tsu01g02333 01 25041396 25042325 ECH
Tsu02g04632 02 55326999 55328017 Tsu02g03676 02 41378128 41379152 ECH
Tsu01g02333 01 25041396 25042325 Tsu02g03676 02 41378128 41379152 ECH
Tsu02g04632 02 55326999 55328017 Tsu02g03676 02 41378128 41379152 PCT