Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03674 aTGGATTTTTATCAAGAGAATCTTGCTCACATTAACAATGACTTTGAGTTACATGATTTCATTGATGATCCAAACTTTGATCAATTCATCAATTTGATTCGTGGTGAGGAGAATGAAGATACTACTATTTGTAACTTCAATTCTGGCCTCataaatccaagttttgttgaTAACTCATTCCTTTCATTTCCTTTGAACCCATTTGATCACAACATAAATAATAACTCTGTTACCCCTTTTGATCCAACTTCTTCACTTAACTCTTTCACTTGTTTTGATGGAGAAGCTAAGGGAGAAAGAGGAGAAGAAAATGATGGAGATAATTACTCATCTCCAACAACAACTAACACTACAACTGCAAGTGTTGATACTAAGCCAAGGTCGAAAACCGATAGATCCAAGACTTTGGTTTCTGAAAGGAGGAGGCGAGGCCGAATGAAGGATAAGCTTTACGCATTGCGTTCTTTAGTTCCCAACATAACTAAGATGGATAAGGCATCTATAATTGGAGATGCTGTTTCATATATGCATGAACTTCAATCACAAGCCAAAAAGCTTAAGGCAGAGGTTGCAGGACTTGAATCATCATTAGCAATGTCCAAAACTTATCAAGGATcaattgaaaaccaaaaaaagattCAATTCAATGGTAACAATGCTTCAATATGCAAGAAGATTGTTAAgATGGATATGTTTCAAGTGGATGAAAGAGGGttttatgttaaaattgttTGCAACAAGGGGGAAAGAGTGGCTTCTTCATTATATAAGTCTCTTGAATCCTTGAAAGATTTCAATGTTCAGAATTCAAATTTGGCGACTATTTCTGACAGTTTTCTCCTTACATTTTCGTTGAATGTGAAAAACTATGAGCAAGAAATCAACCTGCCAAATTTAAAGCTATGGGTGATTAGTGCTTTTCTAAACCAAGGCTTTGAATTGATACCTTCTTTTCAATCTTGA 963 0.3364 MDFYQENLAHINNDFELHDFIDDPNFDQFINLIRGEENEDTTICNFNSGLINPSFVDNSFLSFPLNPFDHNINNNSVTPFDPTSSLNSFTCFDGEAKGERGEENDGDNYSSPTTTNTTTASVDTKPRSKTDRSKTLVSERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYMHELQSQAKKLKAEVAGLESSLAMSKTYQGSIENQKKIQFNGNNASICKKIVKMDMFQVDERGFYVKIVCNKGERVASSLYKSLESLKDFNVQNSNLATISDSFLLTFSLNVKNYEQEINLPNLKLWVISAFLNQGFELIPSFQS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03674 320 MobiDBLite consensus disorder prediction 91 142 - -
Tsu02g03674 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 11 316 - -
Tsu02g03674 320 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 316 - -
Tsu02g03674 320 Pfam Helix-loop-helix DNA-binding domain 138 180 IPR011598 GO:0046983
Tsu02g03674 320 Coils Coil 176 196 - -
Tsu02g03674 320 Gene3D - 122 196 IPR036638 GO:0046983
Tsu02g03674 320 SMART finulus 136 185 IPR011598 GO:0046983
Tsu02g03674 320 MobiDBLite consensus disorder prediction 107 124 - -
Tsu02g03674 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Tsu02g03674 320 MobiDBLite consensus disorder prediction 125 142 - -
Tsu02g03674 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 197 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03674 Tsu-Chr2 41354563 41356460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03674 13 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.943 6.43e-105 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g03674 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03674 - - gmx:100805451 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03674 02 41354563 41356460 Tsu02g03674 02 41354563 41356460 ECH
Tsu02g04629 02 55295505 55297380 Tsu02g03674 02 41354563 41356460 PCT