Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03673 ATGAAAACCATAccagaaattgaaaattttggCTGCACACATTATAGAAGGAGATGCAAGATCGTAGCACCATGTTGTAATGAAGTTTATGGATGTAGGCATTGCCACAATGAAGCTAAGAACTCAAATGAAATGGACCTTATTGACCGTCATGATATCCCGCGGCATGAAGTTAAAAAGGTTATATGCTCCTTATGTGATACAGAGCAAGATGTTCAACAATACTGCATAAACTGTGGAGTTTGTATGGGAGAGTACTTTTGTGGTACATGCAAATTCTTTGATGATGATATTTCAAAGCAACAATACCACTGTGATGAATGTGGCATTTGCAGAACTGGTGGCAAGGATAACTTTTTCCATTGCAAAAGATGTGGATGTTGCTATTCCAAGGAAATCAAAGAGGGGCATAATTGTGTAGAAAGAGCAATGCATCATAATTGTCCTATTTGCTTTGAGTATTTATTTGACACATTAAGAGAAACTAGCGTCTTACCTTGTGGCCATACTATACATTTTGAGTGTGTTAAAGAGATGGAAAAACATCGTAGGTACTCATGTCCTGTTTGCTCAAAATCCATCTGTGATATGTCAAGTGTGTGGAAGAAACTTGATCAAGTGATTTCCTCGACTCCAATGCCTGAATCATACAAAAATAAGAAGGTGTGTTACAACTCCAACTCTAAGGCACACATACATAAACATCGGATACAACGTTGA 720 0.3667 MKTIPEIENFGCTHYRRRCKIVAPCCNEVYGCRHCHNEAKNSNEMDLIDRHDIPRHEVKKVICSLCDTEQDVQQYCINCGVCMGEYFCGTCKFFDDDISKQQYHCDECGICRTGGKDNFFHCKRCGCCYSKEIKEGHNCVERAMHHNCPICFEYLFDTLRETSVLPCGHTIHFECVKEMEKHRRYSCPVCSKSICDMSSVWKKLDQVISSTPMPESYKNKKVCYNSNSKAHIHKHRIQR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03673 239 ProSiteProfiles Zinc finger RING-type profile. 148 191 IPR001841 -
Tsu02g03673 239 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 7 235 - -
Tsu02g03673 239 Pfam Ring finger domain 147 190 IPR001841 -
Tsu02g03673 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 7 235 - -
Tsu02g03673 239 SUPERFAMILY RING/U-box 147 196 - -
Tsu02g03673 239 SMART ring_2 148 190 IPR001841 -
Tsu02g03673 239 SUPERFAMILY Zinc hairpin stack 84 141 IPR037275 -
Tsu02g03673 239 SUPERFAMILY CHY zinc finger-like 8 83 IPR037274 GO:0008270
Tsu02g03673 239 Pfam CHY zinc finger 12 93 IPR008913 GO:0008270
Tsu02g03673 239 ProSiteProfiles Zinc finger CHY-type profile. 5 81 IPR008913 GO:0008270
Tsu02g03673 239 ProSiteProfiles Zinc finger CTCHY-type profile. 83 147 IPR017921 -
Tsu02g03673 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 237 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03673 Tsu-Chr2 41339912 41342587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03673 5 220 C2H2 Transcription Factor Family AT3G18290 37.220 3.28e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03673 K10144 - gmx:100812709 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03673 02 41339912 41342587 Tsu02g03673 02 41339912 41342587 ECH