Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03671 ATGATTAACCAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGTAATCTGTTGAGGACGGTGATATACACTACACCGGAGGATCTTGTGCCGGTTGTTTATCTCTCTGCAAATAGAATTGCTCCGGCGCACGAAGGGTTAGAATTGGGAATTGGTGATGCTTCTATTATTAAGGCGCTCGCTGAGGCGTGCGGAAGGACTGAGCAGCAGATTAGGGTTCAGtataagGAAAAAGGTGACTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTAGGAAGGTTTTCAATACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGACAAGAAAAAGAATCACATAAAATCACTTCTTGTTGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTACAGACAAAATTGCGAATTGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCTGAAATTAAGTCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTATATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTTCGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTTTCAAAAGCAACCAAGGGTGTATCtgaaattctaaataaatttcaGGATGTAGAGTTTACTTGCGAGTACAAATACGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTAGAAATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAgGCTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTCGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCCCGCAAAAATGTAGCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACATGTTGTACCTTAATGGCCAAGCACTTCTTCAGGAAAACCTTAGAATCCGTAGAGAGCATCTCTACGCTTCTTTTGAGGAAGAGTGTGGGTTCTTTCTGTTTGCGACATCAACTACATCAAATGATGTGGAGGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTAATCATTAAAACATTACATGAAGACGCCACATATGAACCCTCCAAGCGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCCCTGGATTTGGTACCTATTGGTGCTTTCCATGGTCGTGGTAAACGCACAGGAGTGTATGGTGCTTATCTCGTTGCTTGCTATGACAAAGAGAACGAAGAATTTCAAAGTATTGTCAAGTTAGCAACTGGATTCACAGAAGAGGAGCTTGAAGAACGTTCTGCTATCCTTCGCTCTAAAATTATTCCCAAACCGAAGGCATATTATAAATGTGGAGAATCAATCAATCCTGATGTCTGGTTTGAAGATAGTGAGGTGTGGGAGGTGAAAGCTGCAGATCTTACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCATAGTAGATTCCAATAAgGGCATATCTCTTCGGTTTCCACGTTTTGTTCGAGTTCGGCCTGACAAAGCTCCTGATCAGGCCACTCCATCTGAGCAGaTTGCTGAAATGTATAATAAGCAAAAACACAACCACACGAACAACCAGGATgacgatgaagatgatgattaa 1821 0.408 MINQESGRIVKTDIVCNLLRTVIYTTPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIRVQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFNTFHLIAKESGKDSQDKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAQIVKKVYSVLPDYDKIVAALLSDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDVCVFAFDMLYLNGQALLQENLRIRREHLYASFEEECGFFLFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAYLVACYDKENEEFQSIVKLATGFTEEELEERSAILRSKIIPKPKAYYKCGESINPDVWFEDSEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRFVRVRPDKAPDQATPSEQIAEMYNKQKHNHTNNQDDDEDDD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03671 606 Gene3D - 1 235 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu02g03671 606 Pfam ATP dependent DNA ligase domain 233 437 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu02g03671 606 ProSitePatterns ATP-dependent DNA ligase signature 2. 411 437 IPR016059 GO:0003909
Tsu02g03671 606 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 49 588 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tsu02g03671 606 CDD OBF_DNA_ligase_I 445 590 - -
Tsu02g03671 606 Gene3D - 243 441 - -
Tsu02g03671 606 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 2 223 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu02g03671 606 SUPERFAMILY Nucleic acid-binding proteins 445 591 IPR012340 -
Tsu02g03671 606 MobiDBLite consensus disorder prediction 571 606 - -
Tsu02g03671 606 CDD Adenylation_DNA_ligase_I_Euk 222 440 - -
Tsu02g03671 606 Pfam DNA ligase N terminus 2 166 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu02g03671 606 ProSiteProfiles ATP-dependent DNA ligase family profile. 339 475 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu02g03671 606 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 225 443 - -
Tsu02g03671 606 PANTHER DNA LIGASE 1 2 605 - -
Tsu02g03671 606 Gene3D DNA ligase/mRNA capping enzyme 262 387 - -
Tsu02g03671 606 Pfam ATP dependent DNA ligase C terminal region 462 573 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tsu02g03671 606 Gene3D - 442 605 IPR012340 -
Tsu02g03671 606 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 2 605 - -
Tsu02g03671 606 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 257 265 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03671 Tsu-Chr2 41320507 41327684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03671 1 605 Core DNA Replication Machinery Family AT1G08130 72.397 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03671 K10747 - gmx:100783155 1019.22