Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03670 ATGTTTAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAGAGAGTGGGAGGATTGTGAAAACTGACATTGTGTGTAATCTTTTGAGGACGGTGATATACACTACACCGGAGGATCTTGTGCCGGTTGTTTATCTCTCTGCAAATAGAATTGCTCCGGCGCACGAAGGGTTAGAATTGGGAATTGGTGATGCTTCTATTATTAAGGCGCTCGCTGAGGCGTGTGGAAGGACTGAGCAGCAGATTAGGATTCAGTATAAGGAAAAAGGTGACTTAGGTTTAGTTGCGAAAGCTAGCCGTTCTTCACAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTAGGAAAGTTTTCAAGACATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGATAAGAAAAAGAATCACATAAAGTCACTTCTTGTCGCTGCAACTGACTGTGAACCTCTATATATAATCCGTTTGCTGCAGACAAAATTGCGAATTGGATATGCCGAACAAACTCTCTTAGCTGCATTAGGCCAAGCTGCAGTGTACACTGAAGAACATTCTAAACCGCCTCCTGAAATTAAATCTCCATTTGAAGAGGCTGCACAGATTGTTAAAAAAGTCTATTCTGTTCTTCCTGATTATGACAAAATTGTGGCTGCACTCCTTTCGGATGGTGTATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCGGTTGGGCCTATGCTGTCAAAAGCAACCAAGGGTGTATCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACATGCGAGTACAAATACGATGGAGAGCGTGCTCAGATACACTACTTGGAGAATGGCTCAGTAGAGATTTACAGTAGAAATGCTGAAAGGAACACTGGGAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCTTTTATCCTTGATTGTGAACTCGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCATTCCAGGTGCTTAGTACTCGAGCACGCAAAAATGTATCAATAAGTGACATAAAGGTTGATGTTTGCGTATTTGCTTTTGACTTGTTGTACCTTAATGGCCAAGCACTTCTTCAGGAAAACCTTAGAATCCGTAGAGAGcaTCTCTACACTTCTTTTGAGGAAGAGTCTGGATTCTTTCAGTTTGCGACATCAACTACATCAAATGATGTAGAAGAGATACAAAAATTTCTTGACCAAGCTATTGATGCAAGTTGTGAGGGATTGATTATTAAAACATTACATGAAGATGCCACATATGAACCCTCCAAGAGGTCGCTCAACTGGCTGAAACTGAAGAAAGATTATATGGAAAATATAGGGGACTCCCTAGATTTGGTACCTATTGGTGCTTTCCATGGACGCGGTAAACGTACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACAACGATAACGAAGAGTTTCAAAGTATTGCCAAGATAGGAACTGGATTCAAAGAGGAAGTGCTTGAAGAACGTTCTACTAGCCTTCGCTCTAAAGTGATTCCCAAACCGAAGTCATATTATCAATATGGGGAATCAACCAATCCTGATGTATGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGACCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGCAAAGTAGATTCCAATAAGGGCATATCTCTTCGATTTCCGCGTCTAGTTCGAGTTCGGCCTGACAAAGCTCCTGAACAGGCCTCTTCGTCTGAGCAGGTTGCTGAAATGTATACTGCTCAAAAACACAATCACAACGACAAACAGGATGACGATGAAGATGATTAA 1950 0.3877 MFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEESGRIVKTDIVCNLLRTVIYTTPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIRIQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQDKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAQIVKKVYSVLPDYDKIVAALLSDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVSISDIKVDVCVFAFDLLYLNGQALLQENLRIRREHLYTSFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSIAKIGTGFKEEVLEERSTSLRSKVIPKPKSYYQYGESTNPDVWFEASEVWEVKAADLTISPVYRAAVGKVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYTAQKHNHNDKQDDDEDD 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03670 649 Gene3D DNA ligase/mRNA capping enzyme 306 431 - -
Tsu02g03670 649 MobiDBLite consensus disorder prediction 620 634 - -
Tsu02g03670 649 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 47 649 - -
Tsu02g03670 649 ProSitePatterns ATP-dependent DNA ligase signature 2. 455 481 IPR016059 GO:0003909
Tsu02g03670 649 PANTHER DNA LIGASE 1 47 649 - -
Tsu02g03670 649 CDD Adenylation_DNA_ligase_I_Euk 266 484 - -
Tsu02g03670 649 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 48 267 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu02g03670 649 Pfam ATP dependent DNA ligase C terminal region 506 617 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tsu02g03670 649 Pfam ATP dependent DNA ligase domain 277 481 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu02g03670 649 Gene3D - 287 485 - -
Tsu02g03670 649 ProSiteProfiles ATP-dependent DNA ligase family profile. 383 519 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu02g03670 649 CDD OBF_DNA_ligase_I 489 632 - -
Tsu02g03670 649 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 93 632 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tsu02g03670 649 Gene3D - 486 649 IPR012340 -
Tsu02g03670 649 MobiDBLite consensus disorder prediction 615 649 - -
Tsu02g03670 649 Gene3D - 44 279 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu02g03670 649 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 269 487 - -
Tsu02g03670 649 SUPERFAMILY Nucleic acid-binding proteins 489 635 IPR012340 -
Tsu02g03670 649 Coils Coil 48 50 - -
Tsu02g03670 649 Pfam DNA ligase N terminus 49 210 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu02g03670 649 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 301 309 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03670 Tsu-Chr2 41297212 41304573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03670 49 649 Core DNA Replication Machinery Family AT1G08130 73.877 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03670 K10747 - gmx:100783155 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03670 02 41297212 41304573 Tsu02g03670 02 41297212 41304573 ECH