Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03653 ATGGGAAGAGCACCATGTTGTGACAAAACAAGTGTCAAGAGAGGTCCATGGTCACCTGAAGAAGACTCTAAACTTAAAGACTACATAGAGAAACATGGCACTGGTGGTAATTGGATTTCTCTTCCTCATAAAGCTggTCTCAAGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTTAACTATCTTAGGCCAAACATTAAGCATGGAGATTTTTCTGATGAGGAAGATAGAATAATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCAATTATAGCAGCTCAATTGCCAGGTAGGACTGACAATGATATCAAGAACTATTGGAacacaaaattgaagaaaaaacttATGGCTTTGCAATTTCCTACATCACATCAAAGAAAACCACAGTTTCCACCTTTTCCTTCTACTCCCTTTACTAATCACACCCCCTTCACAGATTTTCAAACCATTTCACTTCCATCAAATAATAACTATCCAAACACAAGTTTCAACCCCTTTTACCAAAACCAAGAGTCTATGATTAGTCTTAATCCTTCCATGCAATATAATAATTATCATATCAAAGACAATAACATGTTTATGTTTGGAAGTGAAGGAAGTTGTAGTTCATCTGATGGAAGTTGCAAGGAAATCAAGCAAGAAGAAATTGGTTATCATCACATGAATAGTGCTGGATTTGATGactacaataataataactttaTGGTTAATTGTAGCAATGGAAATGTTGGTGAAAATATTAACCAATATGAAGAAAAAACGAGTGGAGTTGGATATGGTTATAATAATGGTCAAAGTCAAATATTAAGTACTCCATTACTAGATTATGGTCTTGAAGATATTAAGCAATTGATTAGTAGTGACaacaaagattttaatgttgatgaGATTCATAATAGTGAAGAAAATGGTATGTATTACTTCCATTATTGA 939 0.3237 MGRAPCCDKTSVKRGPWSPEEDSKLKDYIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALQFPTSHQRKPQFPPFPSTPFTNHTPFTDFQTISLPSNNNYPNTSFNPFYQNQESMISLNPSMQYNNYHIKDNNMFMFGSEGSCSSSDGSCKEIKQEEIGYHHMNSAGFDDYNNNNFMVNCSNGNVGENINQYEEKTSGVGYGYNNGQSQILSTPLLDYGLEDIKQLISSDNKDFNVDEIHNSEENGMYYFHY 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03653 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu02g03653 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu02g03653 312 PANTHER TRANSCRIPTION FACTOR RAX3 1 293 - -
Tsu02g03653 312 CDD SANT 16 62 IPR001005 -
Tsu02g03653 312 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu02g03653 312 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tsu02g03653 312 Gene3D - 70 132 - -
Tsu02g03653 312 SMART sant 13 64 IPR001005 -
Tsu02g03653 312 SMART sant 67 115 IPR001005 -
Tsu02g03653 312 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tsu02g03653 312 PANTHER OS09G0431300 PROTEIN 1 293 - -
Tsu02g03653 312 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g03653 312 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu02g03653 312 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tsu02g03653 312 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03653 Tsu-Chr2 41081334 41083333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03653 1 127 MYB Transcription Factor Family AT5G57620 82.677 2.61e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g03653 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03653 K09422 - gmx:100779919 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03653 02 41081334 41083333 Tsu02g03653 02 41081334 41083333 ECH
Tsu02g05128 02 60322522 60324081 Tsu02g03653 02 41081334 41083333 PCT