Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03647 ATGTATAAGTCTGTATTTATGTACTTTGCTGTGTTTTTATTGCAGATAGAGTCTCTATCAGTTACTTTTCACGGACATGATCTCATAGTTGATTCTGAGTTGGAGTTAAATTATGGGAGACGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAGTCCACTTTACTCACCGCAATAGGAAAGCGGGAACTTCCAATTCCTGAACACATGGATATTCATCACCTTAGCAGAGAAATTGATGCCTCTGACATGTCCGCTTTGGAAGCTGTCATAAGCTGTGATGAAGAAAGGTTGAAATTGGAGCATGAAGCTGAAACTTTGGCAGCTCAGGATGACGGAGGTGGTGAAGCCCTTGAACGTATTTATGAACGATTGGACGCCCTAGATGCGTCAACTGCAGAAAAGCGTGCCGCTGAAATCTTACATGGTCTTGGTTTTGACAAGGCAATGCAGGCAAAGAAGACACGTGATTTTTCCGGAGGCTGGAGAATGAGAATTGCATTAGCAAGAGCTTTATTTATGAATCCTACTGTTCTTCTACTCGATGAACCAACCAATCATCTCGatttgGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAATTTGAACGCATCTTGGTCGTTATTTCACATTCCCAGGATTTCCTTAACGGTGTATGCACAAATATTATCCACATGCAAAGTAAGAAACTGAAGATATACACCGGTAATTATGATCAATATGTTCAGACACGCGGTGACTTAGAAGAGAATCAAATGAAGCAGTATAGGTGGGAGCAAGAGCAGATTGCCAACATGAAGGAATATATTGCTCGATTTGGTCATGGTTCAGCAAAACTAGCTCGTCAGGCACAGAGTAAGGAAAAAACACTGGCAAAAATGGAACGAGGTGGACTTACTGAGAAGGTAGTTAGAGATCAAGTTTTAGTATTCCGCTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTCCAGTTTTCTGAAGTAAGTTTTGGTTACACTCCTGATAATCTCATCTACAAAAACATTGACTTTGGGGTCGACTTAGACTCCAGGATTGCTTTGGTTGGACCAAATGGTGCTGGAAAGAGCACACTGCTGAAGCTAATGACAGGTGATTTGTTTCCTAGTGATGGCATGGTTAAGCGTCATAATCATCTTCGAATTGCACAATATCATCAGCACTTGGCTGAAAAGTTAGACTTAGATGTTCCTGCTCTTCAGTTTATGATGAATGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCTGCTATTGGGAGGTTTGGTCTGACAGGTAAAGCCCAGGTGATGCCTATGAAAAATTTGTCTGATGGGCAAAAGAGTCGAGTGATATTTGCTTGGTTAGCTTGGAGGCAGCCTCAATTGCTACTTTTGGATGAGCCAACTAATCATTTGGATATCGAAACAATTGACTCGCTGGCTGAGGCATTGAATGAGTGGGATGGCGGCTTGGTGCTTGTTAGTCACGATTTTAGGCTGATTAATCAGGTGGCACATGAAATATGGGTTTGCGCTGATCAAAAAGTGACCAGATGGGAGGGTGACATCATGGATTTCAAGAAGCATCTAAAGGCAAAGGCAGGGATATTGGACTGA 1623 0.4214 MYKSVFMYFAVFLLQIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGKRELPIPEHMDIHHLSREIDASDMSALEAVISCDEERLKLEHEAETLAAQDDGGGEALERIYERLDALDASTAEKRAAEILHGLGFDKAMQAKKTRDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKIYTGNYDQYVQTRGDLEENQMKQYRWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDQVLVFRFTDVGKLPPPVLQFSEVSFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPSDGMVKRHNHLRIAQYHQHLAEKLDLDVPALQFMMNEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQKSRVIFAWLAWRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQKVTRWEGDIMDFKKHLKAKAGILD 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03647 540 Pfam ABC transporter 225 297 IPR032781 -
Tsu02g03647 540 Pfam ABC transporter 32 186 IPR003439 GO:0005524
Tsu02g03647 540 Pfam ABC transporter 341 472 IPR003439 GO:0005524
Tsu02g03647 540 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 325 540 IPR003439 GO:0005524
Tsu02g03647 540 CDD ABCF_EF-3 325 517 - -
Tsu02g03647 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 246 IPR027417 -
Tsu02g03647 540 ProSitePatterns ABC transporters family signature. 158 172 IPR017871 GO:0005524
Tsu02g03647 540 Gene3D - 10 278 IPR027417 -
Tsu02g03647 540 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 520 IPR027417 -
Tsu02g03647 540 SMART AAA_5 350 516 IPR003593 -
Tsu02g03647 540 SMART AAA_5 38 240 IPR003593 -
Tsu02g03647 540 Gene3D - 289 537 IPR027417 -
Tsu02g03647 540 PANTHER - 14 540 - -
Tsu02g03647 540 CDD ABCF_EF-3 14 231 - -
Tsu02g03647 540 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 14 254 IPR003439 GO:0005524
Tsu02g03647 540 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 14 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03647 Tsu-Chr2 41007635 41011611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03647 325 518 Calmodulin-binding Proteins AT2G36910 26.106 2.08e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03647 K06185 - gmx:100809491 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03647 02 41007635 41011611 Tsu02g03647 02 41007635 41011611 ECH
Tsu02g05125 02 60282628 60286780 Tsu02g03647 02 41007635 41011611 PCT