Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03622 ATGAGGCCAGAACAATTGCATGTTGCACAACAAATCAGGCGTGACAAATTAAGAATCCAGAATCACATGCAACAAGACTTGATCTCTAACAACAATATAGAAGAATTATTATCACTACACCAACCACCACAAGGTTTCAATAACATGGATCTTCTTCAACTCAGAAATGCTAATgctaacaacaacaacaacatgcTTAATGATGATGGAGCAGGTCATTATTCATCTAATCAAATCATAAATACTTTTTCAACAAGAAACCCTTTGGATTATGAGCTAGCTATAGCTGAACCAAGTAGCAACATTAATAGACTCAATTATTATTACACAAATGAGACCAATATTCCCAACTCTTTCTTAACTTTTCATGAACAACTTAACACTAATGATATTTTCAAGTCTTCAACTTCTTCAGAAATGGCTTCTTTAATGCACCATCAACACATTTGGGGAGGTGTGAATAGTCATAGTCATAATACTAATGCTAATAGTATTGTGCCTATATTTCatgaaaatcaacaaaatcatcatcaatggACAAATAGAAACATTAGTGTTGAAAACAACAACATGGGTTCTTCTTTCTTTAGTGATTATAATCCACAAGGTTTATCTTTATCACTTTCATCAAATTCACaatcaaaacaaccttcaactTCTACTTCAAATTTTGAACAAGGTTCTTTAGTTTCAAGAGATTGTGTGAAACAAATTCATCAagaacatcaacaacaacaacaacctagTACTAGTGGTTTTAGGAATGTTGGTCCATTAGGACCATTTACTGGATATGcaacaattttgaaaaattcaagATTTTTAAAACCATGTCAAGAGTTGTTAGAACAATGTTGTTgtcaaaatgttacaaaaacaAGTAATGTTAATGTTGTTCCAAAATGGGTTTCCAGAGATGTTGGTGTTGATGATGAAAGTGGTGTTGTTTCTGCAAAAGGTAGTACTAGTAATTCAGGTGGTACTTCATCTTGTTCTATGTTGTATGGTtcaaaagagaaagagaaagagaatagtAATGGTGATGGAGGAATTGGGAATAATTTTTGTCTTTCTTCTTCTACTTCTTCTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAGTTACTGTTCATGCACGAAGAGGTGACAAGAAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTATCATCATTTGAGTCAGTAGCAGGTCTTAGTTCAGCTACACCATACATTTCATTGGCTCTAAAGTCACTATCAAAACACTTCAAATGCCTTAAAAATGCTATCACAGATCAACTCAAGCTTACATGTCAAATATTGGGAGAGGATTTTTCGATACTACCAACAACCACAAGTAGTAATAGTAAATTTGATAGCAACAATAATAACATGACAAGGCTAAGATGCATGAATCAGAGTTTTCAAAAGAACAAATCTGGAGGGAATAGTAATGTTGACTTTGTTGAACCTCAACAACAACATGTTTGGAGGCCCCAGAGAGGGTTGCCGGAACGTTCAGTGGCAATTCTTAAAGCTTGGTTATTCGAACATTTTCTTCACCCGTACCCCACGGACACTGATAAACACATGTTGGCTAGTCAAACAGGTCTATCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTAGAGTCCGTGTATGGAAACCAATGGTTGAAGAAATACACATGCTTGAATCAAAAAGCACAACAGAAGTTCAGAATCAGAACAATAGTAAAAATGAAGCCTCCAATGTTAGAGCACATGaaaaacaatttcaatgttTGGAAGTTGGGTCATCTTCAGGAATTAACAATGTTGAAAATGTAATAAATGAAGAGCAATGGAATAATATTCAAGAGAAGAGAtctaaattggaaaatgatCAAATTACACCAAATATGGATACAACAGTGATGGGTTTTATGCCGTATCAACGTGGATCTGTGTCGCTGACTTTGGGTTTGAGACACGGCGTTGAAAATGCACAACACCAACAACAGTTGCAACAAGAGGTGGAGCTTAGACATCAATATGGAGGGCACATGTTCCATGATTTTGTGGGTTAA 2073 0.3247 MRPEQLHVAQQIRRDKLRIQNHMQQDLISNNNIEELLSLHQPPQGFNNMDLLQLRNANANNNNNMLNDDGAGHYSSNQIINTFSTRNPLDYELAIAEPSSNINRLNYYYTNETNIPNSFLTFHEQLNTNDIFKSSTSSEMASLMHHQHIWGGVNSHSHNTNANSIVPIFHENQQNHHQWTNRNISVENNNMGSSFFSDYNPQGLSLSLSSNSQSKQPSTSTSNFEQGSLVSRDCVKQIHQEHQQQQQPSTSGFRNVGPLGPFTGYATILKNSRFLKPCQELLEQCCCQNVTKTSNVNVVPKWVSRDVGVDDESGVVSAKGSTSNSGGTSSCSMLYGSKEKEKENSNGDGGIGNNFCLSSSTSSSRPECQKNKAQLLFMHEEVTRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKSLSKHFKCLKNAITDQLKLTCQILGEDFSILPTTTSSNSKFDSNNNNMTRLRCMNQSFQKNKSGGNSNVDFVEPQQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKSTTEVQNQNNSKNEASNVRAHEKQFQCLEVGSSSGINNVENVINEEQWNNIQEKRSKLENDQITPNMDTTVMGFMPYQRGSVSLTLGLRHGVENAQHQQQLQQEVELRHQYGGHMFHDFVG 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03622 690 SMART HOX_1 498 562 IPR001356 GO:0003677
Tsu02g03622 690 CDD homeodomain 498 559 IPR001356 GO:0003677
Tsu02g03622 690 Pfam Associated with HOX 268 432 IPR006563 -
Tsu02g03622 690 Coils Coil 49 69 - -
Tsu02g03622 690 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 35 661 - -
Tsu02g03622 690 SMART prehox3 263 433 IPR006563 -
Tsu02g03622 690 Pfam Homeobox KN domain 515 554 IPR008422 GO:0003677|GO:0006355
Tsu02g03622 690 Gene3D - 501 563 - -
Tsu02g03622 690 MobiDBLite consensus disorder prediction 207 228 - -
Tsu02g03622 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 661 - -
Tsu02g03622 690 MobiDBLite consensus disorder prediction 240 256 - -
Tsu02g03622 690 SUPERFAMILY Homeodomain-like 500 565 IPR009057 -
Tsu02g03622 690 MobiDBLite consensus disorder prediction 237 256 - -
Tsu02g03622 690 ProSiteProfiles 'Homeobox' domain profile. 495 558 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03622 Tsu-Chr2 40677019 40685683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03622 375 568 Homeobox Transcription Factor Family AT5G02030 55.288 1.80e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu02g03622 POX 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03622 - - cam:101502049 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03622 02 40677019 40685683 Tsu02g03622 02 40677019 40685683 ECH
Tsu02g05109 02 60111271 60114441 Tsu02g03622 02 40677019 40685683 PCT