Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03620 ATGCTCAAACAAGGTAAAGAAGTTCTTATTCCTATCGAATGTACATGTTCTGAACAATTTTACCAGGCGAACTTCAGCTACAAAGTTCTTGAGAACTCAACAACATTTTCAAATATTGCTTGTGAGATTTTTGAAGGACTAGTCAAACATCTCACACTTTCTAATGAAAACCAATCACAACAAGGTAATGAACCAAAAATTGGTGATGTTCTTCATGTACCACTTAGATGTACATGTCCAAAAAATAATGTCTCAAGTATTAAAAGGGTAATAAAGTACTTTGCTACATACCCTCTTATACAAGGagataattttgatatattgatgAAGAAATTTGGTTTCTCACTTGATAATTTCTTAGAAGCTAATCAATTACAAAccttttcatcaatttttcctaaTACAGTTGTTCTAATACCATTAAGTGATTTTAATGGTCCAATCAAAATATTTGATATTCCTGATTCTCCTTCTCCACCTCCTAATTTTCTTCAAACAAATCCACTTGAATCACAAGGATCAACACAACCATCAAATTTATATATTGCAGGACCTATCATAGGTTTTGTATTGATAATCATAACATTGGTTGCAAGTGGATTCTATATGAAGAAATTGAGAAAAAGTGATGTTGATATTGATTCCTTTAATCCAAAAATCACTTCaaattcaaacactttgtattCACCAATGAGAGCTTCTACAACTTCATGTTTATCTCCTGATTTTCTTGTTGGAATAAAGTATTGTTTGCTTAATTACCATATTGAAGAGATAGAGAAAGCAACAAATTTATTTAGTGATTTGAACAAGATTGGTGATTTTGTTTATAAGGGGTTAATCAAGGATATTGAAGTGATGGTTAAGAGGTTAAGATTTGAAGATACTAGTGAGGTAATTGATTTACATTCAAGAATAAATCACATTAATATTGTGAATTTAGTTGGTGTTTGTTATGGTGAAGGTAATGATATTTCATGGTCTTATTTAGTTTTTGAGTTACCTAAAAATGGTTGTTTAAGGGATTGTTTATTGGATTTGGAACCATGCAATAGTCTAACTTGGTATAGAAGGACACAAATAGCATTTGACATAGCAACATGTCTTTACTATTTACATTATTGTTCTTTTCCTTCTTATGCTCATATGAATGTGAATAGTAGAAATATATTTGTGACTGAAAATTGGAGAGGTAAATTAGCAGATGTTGGGGGTGTGTCTAATAATCTTTTGCAAGGAAATGTTTCACAAAAGGTTGATATTTTTgcatttggtgttgttttgcTTGAGTTGATATCAGGAAGAGAAAATTTGGATGGAAAATTGATGAAAGATTGTGTTGGTTTTTTGTTGGGGGAAGGTAGTGAAGGTGGTGGATGTTTTGAAGGGTTGAGGAATTTTGTGGATCCAAATTTGAAGGAGTATTCTCTTCCTGAGGctctttgtttgtgttttttagcTAAAGATTGTGTGAAAGATGATCCATTGCTTAGGCCAACTATGGATGATATTATGAAGGTTCTTGCAAAAATGGTTTAG 1539 0.2969 MLKQGKEVLIPIECTCSEQFYQANFSYKVLENSTTFSNIACEIFEGLVKHLTLSNENQSQQGNEPKIGDVLHVPLRCTCPKNNVSSIKRVIKYFATYPLIQGDNFDILMKKFGFSLDNFLEANQLQTFSSIFPNTVVLIPLSDFNGPIKIFDIPDSPSPPPNFLQTNPLESQGSTQPSNLYIAGPIIGFVLIIITLVASGFYMKKLRKSDVDIDSFNPKITSNSNTLYSPMRASTTSCLSPDFLVGIKYCLLNYHIEEIEKATNLFSDLNKIGDFVYKGLIKDIEVMVKRLRFEDTSEVIDLHSRINHINIVNLVGVCYGEGNDISWSYLVFELPKNGCLRDCLLDLEPCNSLTWYRRTQIAFDIATCLYYLHYCSFPSYAHMNVNSRNIFVTENWRGKLADVGGVSNNLLQGNVSQKVDIFAFGVVLLELISGRENLDGKLMKDCVGFLLGEGSEGGGCFEGLRNFVDPNLKEYSLPEALCLCFLAKDCVKDDPLLRPTMDDIMKVLAKMV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03620 512 SUPERFAMILY Protein kinase-like (PK-like) 249 508 IPR011009 -
Tsu02g03620 512 Pfam Protein tyrosine and serine/threonine kinase 283 404 IPR001245 GO:0004672|GO:0006468
Tsu02g03620 512 Gene3D Phosphorylase Kinase; domain 1 237 333 - -
Tsu02g03620 512 ProSiteProfiles Protein kinase domain profile. 191 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03620 512 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 511 - -
Tsu02g03620 512 Gene3D Transferase(Phosphotransferase) domain 1 336 408 - -
Tsu02g03620 512 Gene3D Transferase(Phosphotransferase) domain 1 409 512 - -
Tsu02g03620 512 ProSiteProfiles LysM domain profile. 95 139 IPR018392 -
Tsu02g03620 512 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 1 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03620 Tsu-Chr2 40649789 40651327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03620 5 512 Receptor kinase-like Gene Family AT2G23770 29.537 1.18e-49 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Tsu02g03620 PK_Tyr_Ser-Thr 2.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03620 - - lja:Lj1g3v4047410.1 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03620 02 40649789 40651327 Tsu02g03620 02 40649789 40651327 ECH