Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03611 ATGGCTTCAGAAGGTGATCTTGAACTAGCTAAACTCAATGGAAAACAAGTAGCTTCTTCTAGAGTATTGTCAAGAGTGTTCTCAGAAGATTACAAGAgagtgagaagaagaagaatattaGATCCTAGGGGACAAATCATTCACCAATGGAATAAGATTTTCTTAGTAGCATGTTTAGTTTCTTTGTTTGTTGATCCACTATTCTTTTATTTGCCAATAGTTCAAGATGAAGTGTGCATTGATATTGGAATAGAAATTGAAGTTGTTCTCATAATTATAAGATCAATTTTGGATGTTTTTTAcatcattcatattttcatGAGGTTTCATATAGCTTATGTTGCTCCTTCTTCTAGGGTGTTTGGGAGAGGAGAACTTGTTATAGACTCTTCTAAGATTGCTACTAGGTACTTGCATAAGGGTTTTTTCTTGGACTTTATTGCTGCACTGCCCCTTCCTCAGGTGTTAATTTGGATTGTGATACCTAATCTTGGAGGTTCAACCATTGCAAACACAAAAAATGTCCTTAGATTCATCATCATATTCCAATATTTGCCAAGGCTATTTCTCATTTTTCCACTTTCATCACAAATTGTAAAAGCTACTGGTGTTGTGACAGAAACTGCATGGGCAGGAGCTGCTTATAATTTGATGCTTTACATGTTGGCTAGTCATGTTTTAGGGGCATGTTGGTATCTTTTATCAATTGAAAGACAAGAAGCATGTTGGAAGAGTGTCTGCAAAATGGAGGAGTCATCTtgtaaatatgatttttttgactGCAATAGGGTTAAAGATTCCACCAGGGCGTCCTGGTTTATAGCGAGTAATGTCACAAGTTTATGTTCACCAAATGGTCCATTTTATCAGTTTGGTATATATGGTGATGCAGTGACATCCAAAGTTACAGCCTCTGCATTTTTTAATAAGTACTTCTTTTGTCTTTGGTGGGGCTTAAGGAATTTGAGTTCATTGGGACAAAGTCTTCTTACTAGTACTTTTGTTGGAGAAATAATGTTTGCCATTGTTATTGCAACCCTTGGATTGGTTCTTTTTGGATTGCTCATTGGTAATATGCAGACATACCTACAATCAACAACTGTCCGGTTAGAAGAGTGGAGGGTCAAAAGAACAGACACAGAACAATGGATGCATCATAGACAGCTACCTCAAGAACTAAAACAATCCGTGCGTAAATATGATCAATATAAATGGCTAGCTACAGGAGGAGTAGATGAAGAAACTCTTCTCAAAGGACTTCCATTGGATCTTCAAAGAGACATTAAGCGTCACCTTTGCCTTGAACTAGTTCGAAGAgTTCCATTATTTGACACAATGGATGAGAGGATGCTTGACGCGATATGTGAAAGACTAAAGCCAGCACTATGCACAGAGAACACATATCTAGTTCGCGAAGGCGATCCTGTAAATGAGATGCTATTCATAATAAGGGGACATCTTGATTCCTACACAACCAATGGAGGCCGCACTGGTTTCTTCAACTCATGTCGTATTGGTCCTGGTGATTTTTGTGGCGAGGAGCTTTTGACATGGGCGTTGGATCCACGACCGAGTATGGTAATACCTTCTTCGACTCGAACGGTTCAAGCCATATCTGAAGTAGAAGGCTTTGCTCTTATAGCAGAAGATTTGAAGTTTGTTGCATCTCAGTTTAGAAGATTGCATAGCAAGCAATTGAGGAACAAGTTAAGGTTTCACTCGCACCAATGGAGAACATGGGCTGCTTGTTTTATACAAGTTGCATGGAGACGTAAGGTACAAGAAAAGAAAGGTAGTTATTGA 1803 0.3749 MASEGDLELAKLNGKQVASSRVLSRVFSEDYKRVRRRRILDPRGQIIHQWNKIFLVACLVSLFVDPLFFYLPIVQDEVCIDIGIEIEVVLIIIRSILDVFYIIHIFMRFHIAYVAPSSRVFGRGELVIDSSKIATRYLHKGFFLDFIAALPLPQVLIWIVIPNLGGSTIANTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSIERQEACWKSVCKMEESSCKYDFFDCNRVKDSTRASWFIASNVTSLCSPNGPFYQFGIYGDAVTSKVTASAFFNKYFFCLWWGLRNLSSLGQSLLTSTFVGEIMFAIVIATLGLVLFGLLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELKQSVRKYDQYKWLATGGVDEETLLKGLPLDLQRDIKRHLCLELVRRVPLFDTMDERMLDAICERLKPALCTENTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSMVIPSSTRTVQAISEVEGFALIAEDLKFVASQFRRLHSKQLRNKLRFHSHQWRTWAACFIQVAWRRKVQEKKGSY 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03611 600 SUPERFAMILY Voltage-gated potassium channels 41 364 - -
Tsu02g03611 600 SUPERFAMILY cAMP-binding domain-like 372 570 IPR018490 -
Tsu02g03611 600 SMART cnmp_10 442 573 IPR000595 -
Tsu02g03611 600 Pfam Ion transport protein 50 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu02g03611 600 CDD CAP_ED 442 573 IPR000595 -
Tsu02g03611 600 PANTHER PROTEIN CNGC15A 16 596 - -
Tsu02g03611 600 ProSiteProfiles cAMP/cGMP binding motif profile. 442 539 IPR000595 -
Tsu02g03611 600 Gene3D Helix hairpin bin 369 433 - -
Tsu02g03611 600 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 596 - -
Tsu02g03611 600 Gene3D - 53 365 - -
Tsu02g03611 600 PRINTS EAG/ELK/ERG potassium channel family signature 405 412 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu02g03611 600 PRINTS EAG/ELK/ERG potassium channel family signature 105 114 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu02g03611 600 PRINTS EAG/ELK/ERG potassium channel family signature 94 104 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu02g03611 600 PRINTS EAG/ELK/ERG potassium channel family signature 311 328 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu02g03611 600 PRINTS EAG/ELK/ERG potassium channel family signature 222 232 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu02g03611 600 PRINTS EAG/ELK/ERG potassium channel family signature 337 348 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu02g03611 600 PRINTS EAG/ELK/ERG potassium channel family signature 355 364 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu02g03611 600 Gene3D Jelly Rolls 440 560 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03611 Tsu-Chr2 40565391 40569847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03611 19 596 Ion Channels AT2G28260 77.336 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03611 K05391 - gmx:100791992 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03611 02 40565391 40569847 Tsu02g03611 02 40565391 40569847 ECH
Tsu02g05104 02 60047440 60051432 Tsu02g03611 02 40565391 40569847 PCT