Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03602 ATGAACACGAGATCCCGAAATTCAATACAGGGATTTCGTGTTTGTATGGATCATTTTATCAAGTTCTTCTTGTTCCTCATTCTCTTTGGTTTAGtGAATGCATGTTTTGCTGAAAATGATTTTGGACATTGTGAAAGAGTTGTTAAGAGTTGGGCGAGTTCTTCTGTTGATAGAGAAATTAGACAAAAAGATAAGCATTCTCTTAAggatttgttgtttttcttgCATGTTCCTAGAACGGGAGGACGCACTTATTTTCATTGCTTTTTGAGGAAATTGTATCCGGGCTATTTGGAATGTCCTCGATCTTATGATAAGTTGCGCTTTGATCCAAGCAAAGAAAAATGTAGACTGTTAACTACCCACAATGACTATAGCATGACATCTAAACTTCCAAAGGATAGAACTTCTGTGGTTACCATACTTAGGGATCCAGTTGACCGTGTCTTTAGTACTTACGAATTTTCAATGGAGGTTGCGGCTAGATTTTTGGTGCATCCAAACTTGACATCTGCAACAAAGATGGCTTTTCGCCTGCGCTCTAAGGCTAAAGGAGTAAGCACATTGGATATCTGGCCGTGGAAATATCTGGTTCCATGGATGAGAGAAGATCTATTTGCTAggAGAGAAGCTAGGTATAGTAAGGGACTGAATACTGTTGAGGGCAGTGATCCTTATGATAGGGAAGATTTTGCAATGCCTTTCCAAGAATACATCAACCATCCTGTGGCTTGGGATATTGTACATAATGGAGCCACATTTCAGGTTGCAGGTTTGACAAACAATTCTTATATAGCAGAAGCACATGAAGTGCGTCATTGTGTACAGAAATATAAGGTTCTTGGTAAATATGTGCTACAAGTTGCAAAGAAGAGACTGGACGATATGTTATATGTTGGTCTTACCGAGGAGCACAGAGAATCTGCAACAATGTTTGCAAATGTTGTTGGTTCTCAGGTTATATCACAGCTTAATGCACCAAACACCAGCCTGGATATTATTGAAACTACAGAACAGAGTTCATTTTCAGATGCTGATCCTGATAGCGGTGAACATCAGAATAGCACCTCGGACAGGGGAGCAATTGAGGCTACTTCAAGTAAAAATGGAGAAGTGGCAAAATCAACCATGACTGTTGGGAAACTCATGGATTCTTATGAAGTCTGTATTTCTAAGTTACGCAGGACCCAGTCAGGCCGACGCGTCGCCTCTTTGAAGAGGATTCCGGTGAACTTTACAAAGGAGGCAATTTCTGAAGGGGTTCTTCAGCAGCTACGATCTCTTAACGATCTTGACTTGGAGCTGTATGAATATGCGAGAGCcattttcaataaacaacatAAAACCTCATTGCTGATTACTGAGGAGAAATTGGACAACATATCAAGTAGTGCATATAGCATCATCCTTTGGAAGGCTCTTACATTAACAATAACTTTCTTCTTCATCCTTTTCTTATTGTTACTAATTGTAAATGTGAGAAGAAGAACGTTGAAGGTTAAGAACGCAGAAACAGCAGCAGACAACAACGACAACAACAAGTGCATTACAGATAAGGAAGcgcttcttcttctcctctcctCTCATCCTACCGCCACCCCCACCCCCACCCCCCTCCTTCATATAAACACCCCCAACTTCCCTTCACTTCCGgaTAATGCTAATATGAAGAACAATTGGTTTTTTGACAACGATTTTAACGGTGTGCcggatgagattcttgaagatGTTGTTGAGTTTTTTGATTTCCCAAATGAAGATGTGGAAACTGATGCTGTGGAACATGATTGGAATGATCAACTCAAACACCTTGAAGAGCCATCTCTTGGGATTTTTCCGGTACCATCATCTGAGCTGCATGGTGAAACTCAAAATGAGAAGCCAAATCCTATGAACAATTTTGCTGCTGCTGAACTTTCTCATATTGACAGAAGAAATGTTGTTAATTCAAGCTTAAAAGTTCAACCAGCACTACGAAGAAAGGCCGCTGGACCACAATATTGCAAACCTATTCCTATCCGAATGGTCTCTTTCAATGGAACAAATTTGCGAAAATGCCAAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTTACTCCTCAGTTGAGAACTTCAACTTTGAGTTACCAAAGCGTCGTCGCAGTAAACGCCAGCGTCTCTCAAGCTTTGACAAGCTCTTCACAATTCCATTTATCTCTACTTCACCTGCTTTTCAAAAACATCAATCGGAGAAACAGCATGCTGGAAAATCATCAAGCAGCGTCCAAAGAAAGCCGAAGAAAAAGGATATCTCCTCACTCTCTGACGGTATTGTGACGAAGAGACCCTCATTACAGGATTCAGGTACCCCCAGAAAATGTATGCATTGTGAGATAACCAAGACACCACAATGGAGAGAGGGGCCAAAGGGTCCGAGGACCCTATGCAACGCTTGTGGAGTTCGATACAGGTCAGGTCGCCTCTTTCCAGAATACCGGCCTGCAGCTAGCCCGACTTTTGAAGCATCATTGCACTCAAATTCTCACAAGAAGGTCTTAGAAATCAGGAAACAGGAACTTTCTCATATTGACAGAAGAAGTATTGTTAATCCAAGCTTAGAAGATCAACCAGCACTACAAAGAAAGGCCGCTGGACCACAATATAGCAAACCTATTCCTATCCGAATGGTCTCTTTCAATGGAACAAATTTGCGAAAATGCCAAACCTACAGCCCAGTTTCAGTTTCTGAAAGCAGTAGTTACTCCTCAGTTGAGAACTTCAACTTTGAGTTACCAAAGCGTCCTCGCAGCAAACACCAGCGTCTCTCAAGCTTTGACAAGCTCTTTACAATTCCATTTATCTCTACTTCACCTGCTTTTCAAAAACATCAATTGGAGAAACAGCATGCTGGCAAATCATCAAGCAGAGTCCAAAGAAAGCCGAAGAAAAATGATATCTCCTCACTCTCTGACGGTATTGAGATGAAGACATCCTCAATACAGGATTCAGCTACCCCCAGAAAATGTATGCATTGCGAGGTAACCGAGACACCACAATGGAGAGAGGGACCTAAGGGTCCGAGGACCCTATGCAACGCTTGTGGAGTTCGATACAGGTCAGGCCGCCTCTTTCCAGAATACCGGCCTGCAGCTAGCCCAACTTTTGAAGCATCATTGCACTCAAATTCTCACAGGAACGTCTTAGAAATCAGGAAAAAGGAACTTTCTCATATTATTGACAGAAGAAATATTGTTAATCCAAGCTTAAAAGAGCAACCAGCACTGCGAAGAAAGGCTGCTGGACCACAATATTGCAAACCTATTCCGATCCGAATGGTCTCTTTCAATGGAACAAATTTGCGAAAATGCCAAACCGACAGCCCAGTTTCAGTTTTTGAGAGCAGTAGTTACTCCTCAGTTGAGAACTTCAACTTTGAGTTACCAAAGCGTCCTCACAGTAAACGCCAGCGTCTCTCAAGCTTTGACAAGCTCTTCACAATTCCATTTATCTCTACTTCACCTGTTTTTCAAAAACATCAATCAGAGAAACAGCGTGCTGGCAAATCACCAAGCAGAGTCCAAAGAAAGCCGAAGAAAAATGATATCTCCTCACTCTCTGACGGTATTGAGATGAAGAGTTCCTCAATACAGGATTCAGCTAACCCCAGAAAATGTATGCATTGCGAGGTAACCGAGACACCACAATGGAGAGAGGGGCCTAAGGGTCCGACGACCCTATGCAATGCTTGTGGAGTTCGTTATAGGTCTGGTCGCCTCTTTCCAGAATATCGACCTGCAGCTAGTCCTACTTTTGAAGCATCATTGCACTCAAATTCTCACAAGAAGGTCTTAGAAATCAGGAAACAGGATAATATTATGTTAGTGATACTATTGAGAAAGAACAAATGTGTTAATCGTGACGAAAACTACAATGTTATTGAACTTTACCTAGGGATGAAGGGATTCACAGGACAATTGATCCCAGATATAAGAGCTCTAAAATACCTCGAAACTCTTTAA 4002 0.4098 MNTRSRNSIQGFRVCMDHFIKFFLFLILFGLVNACFAENDFGHCERVVKSWASSSVDREIRQKDKHSLKDLLFFLHVPRTGGRTYFHCFLRKLYPGYLECPRSYDKLRFDPSKEKCRLLTTHNDYSMTSKLPKDRTSVVTILRDPVDRVFSTYEFSMEVAARFLVHPNLTSATKMAFRLRSKAKGVSTLDIWPWKYLVPWMREDLFARREARYSKGLNTVEGSDPYDREDFAMPFQEYINHPVAWDIVHNGATFQVAGLTNNSYIAEAHEVRHCVQKYKVLGKYVLQVAKKRLDDMLYVGLTEEHRESATMFANVVGSQVISQLNAPNTSLDIIETTEQSSFSDADPDSGEHQNSTSDRGAIEATSSKNGEVAKSTMTVGKLMDSYEVCISKLRRTQSGRRVASLKRIPVNFTKEAISEGVLQQLRSLNDLDLELYEYARAIFNKQHKTSLLITEEKLDNISSSAYSIILWKALTLTITFFFILFLLLLIVNVRRRTLKVKNAETAADNNDNNKCITDKEALLLLLSSHPTATPTPTPLLHINTPNFPSLPDNANMKNNWFFDNDFNGVPDEILEDVVEFFDFPNEDVETDAVEHDWNDQLKHLEEPSLGIFPVPSSELHGETQNEKPNPMNNFAAAELSHIDRRNVVNSSLKVQPALRRKAAGPQYCKPIPIRMVSFNGTNLRKCQTYSPVSVFESSSYSSVENFNFELPKRRRSKRQRLSSFDKLFTIPFISTSPAFQKHQSEKQHAGKSSSSVQRKPKKKDISSLSDGIVTKRPSLQDSGTPRKCMHCEITKTPQWREGPKGPRTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHKKVLEIRKQELSHIDRRSIVNPSLEDQPALQRKAAGPQYSKPIPIRMVSFNGTNLRKCQTYSPVSVSESSSYSSVENFNFELPKRPRSKHQRLSSFDKLFTIPFISTSPAFQKHQLEKQHAGKSSSRVQRKPKKNDISSLSDGIEMKTSSIQDSATPRKCMHCEVTETPQWREGPKGPRTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHRNVLEIRKKELSHIIDRRNIVNPSLKEQPALRRKAAGPQYCKPIPIRMVSFNGTNLRKCQTDSPVSVFESSSYSSVENFNFELPKRPHSKRQRLSSFDKLFTIPFISTSPVFQKHQSEKQRAGKSPSRVQRKPKKNDISSLSDGIEMKSSSIQDSANPRKCMHCEVTETPQWREGPKGPTTLCNACGVRYRSGRLFPEYRPAASPTFEASLHSNSHKKVLEIRKQDNIMLVILLRKNKCVNRDENYNVIELYLGMKGFTGQLIPDIRALKYLETL 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03602 1333 ProSiteProfiles GATA-type zinc finger domain profile. 782 818 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 SMART GATA_3 1213 1263 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 SMART GATA_3 997 1047 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 SMART GATA_3 782 832 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 ProSitePatterns GATA-type zinc finger domain. 1003 1028 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 784 845 - -
Tsu02g03602 1333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 999 1060 - -
Tsu02g03602 1333 MobiDBLite consensus disorder prediction 861 881 - -
Tsu02g03602 1333 CDD ZnF_GATA 787 834 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1215 1276 - -
Tsu02g03602 1333 Gene3D - 67 354 IPR027417 -
Tsu02g03602 1333 MobiDBLite consensus disorder prediction 739 754 - -
Tsu02g03602 1333 MobiDBLite consensus disorder prediction 954 996 - -
Tsu02g03602 1333 Gene3D - 780 861 IPR013088 GO:0006355|GO:0008270
Tsu02g03602 1333 Gene3D - 994 1071 IPR013088 GO:0006355|GO:0008270
Tsu02g03602 1333 Gene3D - 1210 1284 IPR013088 GO:0006355|GO:0008270
Tsu02g03602 1333 MobiDBLite consensus disorder prediction 1175 1199 - -
Tsu02g03602 1333 CDD ZnF_GATA 1002 1049 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 PANTHER TYROSYLPROTEIN SULFOTRANSFERASE-RELATED 16 450 - -
Tsu02g03602 1333 MobiDBLite consensus disorder prediction 1170 1213 - -
Tsu02g03602 1333 Pfam GATA zinc finger 1219 1252 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 Pfam GATA zinc finger 788 821 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 Pfam GATA zinc finger 1003 1036 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 ProSiteProfiles GATA-type zinc finger domain profile. 997 1033 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 MobiDBLite consensus disorder prediction 959 983 - -
Tsu02g03602 1333 MobiDBLite consensus disorder prediction 739 787 - -
Tsu02g03602 1333 PANTHER HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 16 450 IPR010635 GO:0008146|GO:0016021
Tsu02g03602 1333 MobiDBLite consensus disorder prediction 338 369 - -
Tsu02g03602 1333 ProSitePatterns GATA-type zinc finger domain. 788 813 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 ProSiteProfiles GATA-type zinc finger domain profile. 1213 1249 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 CDD ZnF_GATA 1218 1265 IPR000679 GO:0006355|GO:0043565
Tsu02g03602 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 157 IPR027417 -
Tsu02g03602 1333 ProSitePatterns GATA-type zinc finger domain. 1219 1244 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03602 Tsu-Chr2 40417850 40435615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03602 559 862 C2C2-Gata Transcription Factor Family AT1G08010 34.877 4.68e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu02g03602 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03602 K22218 - gmx:100810026 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03602 02 40417850 40435615 Tsu02g03602 02 40417850 40435615 ECH
Tsu02g05090 02 59945593 59950403 Tsu02g03602 02 40417850 40435615 PCT