Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03598 ATGAAGGAAGCTGAAAAAGGGTTCTTGGATCCACAACTATGGCAAGCTTGTGCTGGTGGAATGGTTCAGATTCCGCAAGTGAACTCTAAAGTTTACTACTTTCCACAAGGTCATGCTGAACATGCTAACACAAACATTGATCTAAGGGTTTCAGTTCCACCACTGATTTTAAGTAAAGTTGTTGCTGTTAAATTCATGGCTGACCCAGAAAGTGATGAAGTTTTTGCTATCTTAAAGCTTCTTCCTTTAAGAAATTCAGAGTTTGGTTATGGTGAAGAAAGTTGTGGTGGTGATGGTTTGGAAAATTCAGAAAAGCCTGCATCTTTTGCAAAGACTTTGACTCAATCTGATGCAAATAATGGTGGGGGGTTTTCTGTTCCGAGATACTGTGCTGAGACGATCTTTCCTCGGCTTGATTATGCAGCTGAGCCGCCTGTTCAGACGGTGGTGGCGAAGGATGTTCATGGTGAGCTTTGGAAGTTTAGGCATATTTATAGAGGGACGCCGCGTAGGCACTTGCTTACAACAGGATGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTGGTGTTTTTGAGGGCTGAGAATGGTGAATTGTGTGTTGGAATTCGAAGGGCGAAAAAGGGAATTGGTAGTGGTTTTGATGGTTCATCTTGTGGTTGGACTTCTGGTTCAGGTTCTAACAATGGAAATTGTGGAATTGGACCTTTTGGtgcattttcttttttcctGAAAGAGGAGAATAAGACATCGAGAAATGGTTTCGTTGGTGTTGATGGTAATTTGAGTGGAAGAGTGAGAGTGAGACATGAAGATGTTATGGAAGCTGTGAAATTGGCTGCTAATAACCAACCATTTGAAGTTGTTTACTATCCGAGAGCAAGCACTCCTGAGTTTTGTGTCAAGGCTTCAGCTGTGAGAGCTGCTATGAGGATTCAGTGGTGTTCTGGAATGAGGTTCAAGATGCCTTTTGAAACTGAAGACTCTTCTAGGATTAGTTGGTTTATGGGAACTATTGCTTCTGTTCAGGTTGTTGATCCTATTCGCTGGCCTAATTCACCGTGGCGCCTTCTTCAGGTTACATGGGACGAGCCAGACTTACTACAAAACGTGAAGCGCGTTAGCCCGTGGTTGGTCGAATTAGTTTCAAACGTACCGGTCATTCATTTCTCACCGTTTACTCCACCGAGGAAGAAGCTGCGGTTTCCACAAAACCTAGACTTCCCCCTCGACGTTCAATTTCCGTCACCAACATTTTCAGGCAACCAGCTCGGGCTAAACAGCCCTTTGTTTGGTTTATCTGATAATGCTCCTGCATGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAACAAGAATAAACTTCAGTTAGGGTTGTTTCCTACTAATATCCAGCACCTCGATGTGCATAATAGGATTTCAAATGGTAACAACAACACGATGACCGACAATGATAAGAATAAAGAAAGCTTATCATGCTTGTTGACCATAGGGAAAAAATCTGACAAGAGTTTGGAGAAATCTCaatctgatgatgatgttgttaaGAAACATCAGTTTTGTCTTTTTGGTCAACCGATACTCACTGAGCAACAAATTTCTAGAAATTGTTCTGAAAAAGACTTAGCAGATGAGAGTAAGGATAAAGAGAAGTGGTTTTTGGATGCATTTTCAGCAGGAAAAGGTTCTGATGCTGCTGAGTTTAGTTGGCAACTTGGTTTGGATATCGGTCATTGTAAGGTTTTCTTGGAATCAGAAGATGTTGgaaggacacttgatttatcacTTCTTGGTTCTTATGAAGAGCTCTACAAGAAACTGGCTAAcatgtttgatttagaaaaatcCGAGATGTTGAACCGTGTGTTCTACCGCGATGCAACAGGTGCTGTGAAGCAAACTGGTGAAGAACCCTTCAGTGAATTCTTGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAACAAAAATGTCAGAGGGGCTTGGATTACAGGAACTCACAAGGGTGAACATGGATTGAATGCCTCAAACAAAACAGGTCCTCTAAGCATATTTGCTTAA 2106 0.4065 MKEAEKGFLDPQLWQACAGGMVQIPQVNSKVYYFPQGHAEHANTNIDLRVSVPPLILSKVVAVKFMADPESDEVFAILKLLPLRNSEFGYGEESCGGDGLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGSGFDGSSCGWTSGSGSNNGNCGIGPFGAFSFFLKEENKTSRNGFVGVDGNLSGRVRVRHEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNVPVIHFSPFTPPRKKLRFPQNLDFPLDVQFPSPTFSGNQLGLNSPLFGLSDNAPACIQGARHAQFGGISLSDLNLNKNKLQLGLFPTNIQHLDVHNRISNGNNNTMTDNDKNKESLSCLLTIGKKSDKSLEKSQSDDDVVKKHQFCLFGQPILTEQQISRNCSEKDLADESKDKEKWFLDAFSAGKGSDAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEELYKKLANMFDLEKSEMLNRVFYRDATGAVKQTGEEPFSEFLKTAKRLTILTDSGNKNVRGAWITGTHKGEHGLNASNKTGPLSIFA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03598 701 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Tsu02g03598 701 Gene3D - 589 673 - -
Tsu02g03598 701 Gene3D - 318 391 - -
Tsu02g03598 701 SUPERFAMILY DNA-binding pseudobarrel domain 103 210 IPR015300 -
Tsu02g03598 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g03598 701 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu02g03598 701 Gene3D - 107 211 IPR015300 -
Tsu02g03598 701 CDD B3_DNA 108 209 IPR003340 GO:0003677
Tsu02g03598 701 PANTHER AUXIN RESPONSE FACTOR 2 678 - -
Tsu02g03598 701 SMART B3_2 109 211 IPR003340 GO:0003677
Tsu02g03598 701 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
Tsu02g03598 701 ProSiteProfiles PB1 domain profile. 589 669 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03598 Tsu-Chr2 40368102 40372041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03598 1 673 B3 DNA Binding Superfamily AT4G30080 56.528 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu02g03598 B3 3.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03598 - - gmx:100814686 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03598 02 40368102 40372041 Tsu02g03598 02 40368102 40372041 ECH
Tsu07g03873 07 44849705 44851814 Tsu02g03598 02 40368102 40372041 ECH
Tsu01g02435 01 26292214 26295142 Tsu02g03598 02 40368102 40372041 ECH
Tsu02g05089 02 59919149 59923417 Tsu02g03598 02 40368102 40372041 PCT