Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03583 ATGGCTAAAGATGTTGAGGTTCAAGAACAAGGAGAATACTCAGCTAAAGATTACCAAGATCCACCTCCAGCACCATTGATAGATGTTGAGGAATTAACTAAGTGGTCTTTTTATAGAGCTCTTATAGCTGAGTTTGTAGCAACACTTCTTTTCCTTTATGTCACTATTTTGACCATCATTGGTTATAGCCACCAGACTGATCCTAAAGCTGGTGGTACTGACTGTGATGGTGTTGGCATTTTGGGTATTGCTTGGGCTTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCTGCCGTGACATTCGGGCTACTTGTTGGACGAAAGATATCCTTGATAAGGGCAATATTCTACATGGCAGCACAGTCTGCCGGCGCAATCTGCGGTACCGGACTTGCCAAAGGTTTCCAAAAGGCATTCTTTGACAGGTACGGAGGTGGTGCCAACTTTATCCATGATGGTTACAACAAAGGTACAGCTTTAGGTGCTGAAATTATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGGAATGCTAGAGACTCTCATGTTCCTGTTTTGGCACCACTTCCCATTGGATTTGCTGTTTTCATGGTTCACTTGGCTACTATCCCAATTACCGGTACCGGTATTAACCCGGCAAGAAGTTTCGGATCAGCCGTAATCTACAACGACGAAAAAATTTGGGATGATCAGTGGATATTCTGGGTTGGACCAATTATTGGAGCAACAATAGCTGCAATTTACCACCAATACATTCTAAGAGGATCAGCCATTAAAGCTCTTGGATCCTTCAGAAGCAATGCTTAA 858 0.4347 MAKDVEVQEQGEYSAKDYQDPPPAPLIDVEELTKWSFYRALIAEFVATLLFLYVTILTIIGYSHQTDPKAGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLVGRKISLIRAIFYMAAQSAGAICGTGLAKGFQKAFFDRYGGGANFIHDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGSAVIYNDEKIWDDQWIFWVGPIIGATIAAIYHQYILRGSAIKALGSFRSNA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03583 285 SUPERFAMILY Aquaporin-like 30 270 IPR023271 -
Tsu02g03583 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Tsu02g03583 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Tsu02g03583 285 PANTHER AQUAPORIN PIP2-4-RELATED 1 285 - -
Tsu02g03583 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g03583 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Tsu02g03583 285 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g03583 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g03583 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g03583 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g03583 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g03583 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g03583 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g03583 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03583 Tsu-Chr2 40233299 40235466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03583 1 283 Major Intrinsic Protein MIP AT5G60660 78.092 1.10e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03583 K09872 - gmx:100811119 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03583 02 40233299 40235466 Tsu02g03583 02 40233299 40235466 ECH
Tsu07g03870 07 44824186 44825997 Tsu02g03583 02 40233299 40235466 ECH
Tsu02g05081 02 59808554 59810831 Tsu02g03583 02 40233299 40235466 PCT