Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03573 ATGAGTTCTCAACAAAATAAACATGATGCTGCTGATACTACTTGCAGAAGAACTCTTTCTCTTCCTGTTGTTCATAAGgaTGATGACGATGATCCAATCGGGATAACGGAAGAAACAACGCATGTTCCTCCAAGGAAGAAACAGAATCTTCTCCTAGAAATACCATCAAGAACACCAGAAGAGTGTTCACAAGATTTCGTTGCAATCAAAATGCCAATGACACCAAGTCCTAATCCAACTCCTACTCCCAAGAGAGTGAATTTTTTAATGACTTCTCGCTCGGTCGATGTTCCGACAAGTAACTCTCCTGGATCAGCATCATCGAAAGGCAAATCATCCATTAGAAAAAACTTGCTACCGAAATTGAGCTTCCGGTATAGGACAGCAGCAGCAGATATTGAAAAGGCGAATACGCCAACTCCGGATGTTTCCTCTTCAGGCCATCGAGAAAAGCCATCGATTTCAAGATCGTTGTCCCTTAGTAAAATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTTGAAGAAATTGGACATTCAAACCCCGAATCAACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTCTGAGTAAAAAAGAGACTCGGCAAAAGATAGCGCGTTCTCTTTCAATGCCtgccaacaacaacaaagacaAAAGTATAAGGAGGATGGATTCATTTTTCCGCGTCGTGCCTTCTACTCCTCGAGTAAAGGAAATAAATGAAACGTTGAACACGTCCCCGACAAAGGATACTGAAGACGAAGATGCTGACGGAGGCGAAGATATAGCTGAAGAAGAGGCAGTGTGTAGAATCTGTTTGGTTGAATTATGCGAAGGCGGTGAGACGTTCAAATTAGAATGTAGCTGCAAAGGTGAGCTTGCTTTGGCTCACCAAGAATGTGCTATTAAATGGTTCAGTATAAAGGGTAACAAGACATGCGATGTCTGCAAAAATGAAGTTACAAATCTTCCTGTCACTCTATTACGGATCCAAAGTACTCGAAATCGAATTAGTGGAACAAGTAGAGCTCAGCTCGAAGATATAAACGGGTACAGGGTTTGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGTTGgcctatttttgttttcttgaacAACTATTGGTTACAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCATGTGTACTTGGTCTTCTCTCCTCCATGACATCGTCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCGTCTTGCCAGTTTGCTATGGTGGTTCTATTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTTTCGATCCTTCTTGCAACATTTGCTGGATTTGGTGTGGTAATGAGTGGAAGTTCTATCCTTGTGGAGTTTTTCAGATGGAGAAGGAGATGGCAGGCTTCATCCGAGCAGCAACATGGCCCTCTACCGCTAACACAAGCAGGACAGCAACCACAAAATATAAACACACCACGTTCGGGCCAATCCAACCTTAGTCATCCTGTGGTTCAAGATCAGCAAAACTCAAATCAGAGCTGA 1563 0.4159 MSSQQNKHDAADTTCRRTLSLPVVHKDDDDDPIGITEETTHVPPRKKQNLLLEIPSRTPEECSQDFVAIKMPMTPSPNPTPTPKRVNFLMTSRSVDVPTSNSPGSASSKGKSSIRKNLLPKLSFRYRTAAADIEKANTPTPDVSSSGHREKPSISRSLSLSKIFTPRMKRTSSLPFEEIGHSNPESTHGGNGSVGGPLSKKETRQKIARSLSMPANNNKDKSIRRMDSFFRVVPSTPRVKEINETLNTSPTKDTEDEDADGGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKNEVTNLPVTLLRIQSTRNRISGTSRAQLEDINGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASCQFAMVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQASSEQQHGPLPLTQAGQQPQNINTPRSGQSNLSHPVVQDQQNSNQS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03573 520 PANTHER OS02G0165000 PROTEIN 36 494 - -
Tsu02g03573 520 SUPERFAMILY RING/U-box 268 323 - -
Tsu02g03573 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 327 IPR013083 -
Tsu02g03573 520 MobiDBLite consensus disorder prediction 133 204 - -
Tsu02g03573 520 Pfam RING-variant domain 272 319 IPR011016 GO:0008270
Tsu02g03573 520 MobiDBLite consensus disorder prediction 138 168 - -
Tsu02g03573 520 MobiDBLite consensus disorder prediction 480 520 - -
Tsu02g03573 520 MobiDBLite consensus disorder prediction 176 193 - -
Tsu02g03573 520 MobiDBLite consensus disorder prediction 21 44 - -
Tsu02g03573 520 CDD RING_CH-C4HC3_MARCH 272 320 - -
Tsu02g03573 520 ProSiteProfiles Zinc finger RING-CH-type profile. 264 326 IPR011016 GO:0008270
Tsu02g03573 520 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 494 - -
Tsu02g03573 520 SMART ringv_2 271 320 IPR011016 GO:0008270
Tsu02g03573 520 MobiDBLite consensus disorder prediction 244 263 - -
Tsu02g03573 520 MobiDBLite consensus disorder prediction 21 47 - -
Tsu02g03573 520 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03573 Tsu-Chr2 40155671 40160030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03573 265 375 C3H Transcription Factor Family AT5G05830 33.058 1.59e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03573 - - gmx:100788108 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03573 02 40155671 40160030 Tsu02g03573 02 40155671 40160030 ECH
Tsu02g05073 02 59760681 59764966 Tsu02g03573 02 40155671 40160030 PCT