Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03564 ATGGCTTCCTCCAACAATTCCATAGCAGAAAACAacaagaaaaccaaaaaatcacaCACCTCAACACCTACTAGTAaaatcaaaaaggaaaaatcCATACAAAAATCcaaagaaaagaagaacaaaaacaagaatgaagagaacaaaaacaacaacagcaAGAATAAGAAGAAGCTGAATTTCACCAATGGAAAAtctaaagaaaaagaagtcaATGGAAAGAAACATCGTAAGAACAACAAAGACGATGacgaaaatgaagaagaagcgAAAACGAACGTGTTTCCAATGAATCGAATCAGAACGATTTTAAAAGGAGAAATTAGCGATTTGCGTATTTCTCAGGAAGCTGTGTTGGCTATTAACAAAGCTGCGgAGAAGTTTCTTGAACAATTGGCGCAGGAAGCTTATGTTTGTACAGTTCAGGATCGTAAGAAATATCTGAGTTACAATCATCTATCTCGCGTTGTCAGTAAGCAAAGAAGATATGACTTTCTGTCTGATTTTGTTCCCGAGAAAGTGAAAGCCGAAGATGCATTAAGAGAGACAAACTTAAGAGGGAATAGAGGAGCTCAGAAAATACCTGCTCCGGCACCAGATGATGCAGGCCCAACAGACATTATCAGAATCCTCAAAAAGGCCGGAGGGTACACCACGCTAATCCGTCTTCTCCAGACAACACAAGTGTCCACCCAAATCGACTCTCAACTCTTAACCTCGAACGGTGGTATAACCTTTTTTGCGCCAAACGACAATGCCTTTTCGAGCCTCAAACCTGGTTTTCTCAATTCGCTTAGCGATGAACAAAAGAACAAGTTGATTCAATTCCACTTGTTACCTACATTTGTATCCACGACGAATTTCGATACTTTGAGCAACCCTGTGAGAACACAGGCTGGTGATGACTCTTTTAGGTTGGGACTGAATGTAACAAGTTCAGGAAACCAAGTGAACTTGACAACAGGTATTGTGAATGCCACAGTTGGTGGCACTGTTTACACTGATCGCCAGCTCGTGGTTTACCAAGTCGACAAGGTGCTTCTTCCTCGTGATTTCTTCGTTGCTAAAACTCCTGCACCGGCTCCAGCTCCTGAAAAGGCTAAGGCATCGTCATCTAAGAAGAAATCTGCTGATAACGATGTAGTTGCAGGAGACGATGATTCTGCTGCTTCTGCTGCTGCTAGTGTGAAACAGCAGTGTCTCATGTCTGTTCCTGTTGCATTTGCTACAATTACAGTAGCATTATTCTCATGGTGA 1257 0.3811 MASSNNSIAENNKKTKKSHTSTPTSKIKKEKSIQKSKEKKNKNKNEENKNNNSKNKKKLNFTNGKSKEKEVNGKKHRKNNKDDDENEEEAKTNVFPMNRIRTILKGEISDLRISQEAVLAINKAAEKFLEQLAQEAYVCTVQDRKKYLSYNHLSRVVSKQRRYDFLSDFVPEKVKAEDALRETNLRGNRGAQKIPAPAPDDAGPTDIIRILKKAGGYTTLIRLLQTTQVSTQIDSQLLTSNGGITFFAPNDNAFSSLKPGFLNSLSDEQKNKLIQFHLLPTFVSTTNFDTLSNPVRTQAGDDSFRLGLNVTSSGNQVNLTTGIVNATVGGTVYTDRQLVVYQVDKVLLPRDFFVAKTPAPAPAPEKAKASSSKKKSADNDVVAGDDDSAASAAASVKQQCLMSVPVAFATITVALFSW 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03564 418 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 190 413 - -
Tsu02g03564 418 Gene3D Histone, subunit A 54 172 IPR009072 GO:0046982
Tsu02g03564 418 MobiDBLite consensus disorder prediction 358 382 - -
Tsu02g03564 418 SMART fasc_3 245 350 IPR000782 -
Tsu02g03564 418 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 95 157 IPR003958 -
Tsu02g03564 418 Coils Coil 29 57 - -
Tsu02g03564 418 SUPERFAMILY Histone-fold 78 171 IPR009072 GO:0046982
Tsu02g03564 418 MobiDBLite consensus disorder prediction 12 54 - -
Tsu02g03564 418 ProSiteProfiles FAS1/BIgH3 domain profile. 204 347 IPR000782 -
Tsu02g03564 418 Gene3D FAS1 domain 188 350 IPR036378 -
Tsu02g03564 418 MobiDBLite consensus disorder prediction 61 91 - -
Tsu02g03564 418 Pfam Fasciclin domain 216 349 IPR000782 -
Tsu02g03564 418 SUPERFAMILY FAS1 domain 202 350 IPR036378 -
Tsu02g03564 418 MobiDBLite consensus disorder prediction 1 91 - -
Tsu02g03564 418 MobiDBLite consensus disorder prediction 368 382 - -
Tsu02g03564 418 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 190 413 IPR045003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03564 Tsu-Chr2 40011841 40019196 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03564 78 156 CCAAT-HAP5 Transcription Factor Family AT1G07980 45.570 1.23e-17 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tsu02g03564 Fasciclin 9.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03564 - - ahf:112786352 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03564 02 40011841 40019196 Tsu02g03564 02 40011841 40019196 ECH