Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03556 ATGATGTCTAAACAATCCTTTTCAGTTTCACCTCATTCAAACACCATGAAAGCTTCTTCATCAAATCATGTTCAACAATCAAACTCAAACCCTAATCCAAACCTAcctaagaaaaaaagaaacctACCAGGAACACCAGATCCAGATTCAGAAGTGGTAGCTATGTCACCAAAGTCATTGATGGCGACAAATCGTTTCTTATGCGAAATTTGCAACAAAGGTTTCCAAAGAGACCAGAATTTGCAGCTTCATCGACGAGGACACAATCTACCATGGAAGTTGAAGCAAAGAACCAACAAAGATCAAGTTAAAAAGAAAGTTTATGTTTGTCCTGAGAAGAGCTGTGTGCACCATGAACCTTCAAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAAATGGAAGTGTGAAAAGTGTTCTAAGAAATACGCAGTTCAATCTGATTGGAAAGCTCATAGCAAAATATGTGGAACTAgagaatacaaatgtgattgTGGCACCATTTTTTCCAGGAAGGACAGTTTCATAACACATAGAGCTTTCTGTGATGCATTGACCGAAGAAAGTGGAAAGATAACAACAGTTCCAGCAGCTTTAAGCAACTTTCGTAATGATCATTTAACAAATAATCATCAAACTCCAAGAATCCCTCACATTTTTCCTGGTTTTCAGTTTCACTCAGAATTTCTCAATTCAGCAACATGGCAACAAAACCAAGCAAATTCTCAGTTACTTCATCAGAATTCTGATATAATGCAATTGCAAACAATGGATGTGTTTGgatcacaaacacaaacacaaaatcaacaacaatggttgaattataatagtaataatcTATCATTACCAATGTTACATGGAGTAAtgaaacaagaacaagaacaagaagaaaacaaagattTGTCTCATAGTGTAATAAGTTCATTGTACTTGAGTAGTAGTAGTCAGAATCAACAAGGAGGACCAAATCACATGTCAGCAACTTCACTGTTACAGAAAGCATCTCAAATTGGATCTACAAGGACAATTATTAGTACCAATGATAACAACACAGTTTTCAACAATGTGAACAACAACTTTAACAACATTGTTAATGATGTTCAGAAATTTTATAACAAGCAAGATGAAAATGTTGAGTTGAATGAGTTGGTGAATTTAGGAGGAAGTAGTAGAAGTACTAATGTTGAAGCTGCTGGTGAGTATTTATTTaatgattcaaattcaaataatttgtttGGAATTGTGAATGGTACAAAGGATTTGAATCATGTGGTAATGTCGGTGGATAAAGAGACAAGTACAAGAGAGAGATTAAAAGAGAAAAGCCAAATGGGTTTAACAAGAGATTTTCTTGGAGttggagatgatgatgatggttcaATGAGTAGACCTTTTTTACAGCATGAACTTGGTGAATTTAATGGAATGGGATCATTGGCAAATAATTTGCAGAGTCAGTATGGTGGTGGACATTACTGCTAG 1509 0.3174 MMSKQSFSVSPHSNTMKASSSNHVQQSNSNPNPNLPKKKRNLPGTPDPDSEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVKKKVYVCPEKSCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEESGKITTVPAALSNFRNDHLTNNHQTPRIPHIFPGFQFHSEFLNSATWQQNQANSQLLHQNSDIMQLQTMDVFGSQTQTQNQQQWLNYNSNNLSLPMLHGVMKQEQEQEENKDLSHSVISSLYLSSSSQNQQGGPNHMSATSLLQKASQIGSTRTIISTNDNNTVFNNVNNNFNNIVNDVQKFYNKQDENVELNELVNLGGSSRSTNVEAAGEYLFNDSNSNNLFGIVNGTKDLNHVVMSVDKETSTRERLKEKSQMGLTRDFLGVGDDDDGSMSRPFLQHELGEFNGMGSLANNLQSQYGGGHYC 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03556 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 468 - -
Tsu02g03556 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Tsu02g03556 502 MobiDBLite consensus disorder prediction 1 36 - -
Tsu02g03556 502 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 13 468 - -
Tsu02g03556 502 MobiDBLite consensus disorder prediction 1 53 - -
Tsu02g03556 502 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Tsu02g03556 502 SMART c2h2final6 66 88 IPR013087 -
Tsu02g03556 502 SMART c2h2final6 108 138 IPR013087 -
Tsu02g03556 502 SMART c2h2final6 143 163 IPR013087 -
Tsu02g03556 502 Gene3D Classic Zinc Finger 120 200 - -
Tsu02g03556 502 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Tsu02g03556 502 Gene3D Classic Zinc Finger 45 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03556 Tsu-Chr2 39967264 39969453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03556 37 486 IDZ Gene Family AT5G03150 45.738 1.74e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g03556 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03556 K25870 - gmx:100781896 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g05063 02 59690279 59693021 Tsu02g03556 02 39967264 39969453 PCT