Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03552 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGATAAGAATGCATTGTGTATTAAGGAATGTGAAAAAGGTTGTTGTTTGTCTCATTCAAATTGTTCTTCAACTTCACCacttgtttcttcttcttatctTGAACTTTGGCATGCTTGTGCTGGTCCTCTTACTTCACTTCCTAAGAAAGGAAATGTTGTGGTTTATTTTCCACAAGGTCACTTAGAACAATTTGcttctttttctccttttaaACAATTAGAGATACCAACCTATGATCTTCAGCCTCAGATCTTTTGCAGGGTTGTCAATATTCAACTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAGGCTGAGtTTGCTGAAATGCATATGGAGGGAAAAGAAGTTGAGGAATTAGAAGGCGACGAAGAGGGAGATGAAGGGTCACCTACAAAGTCAACCCCTCACATGTTCTGCAAGACACTAACTGTCTCTGATACCAGCACTCATGGTGGATTCTCTGTACCTCGTAGAGCTGCTGAAGACTGCTTTCCACCTTTGGATTATAAGCTGCAGAGGCCCTCTCAAGAGCTTGTTGCCAAAGATCTGCATGGTATCGAGTGGAAATTTCGTCATATATATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGATGGAGCATTTTTGTGAACCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGAGTGAAAATGGAGAGCTGAGATTAGGAATCAGAAGAGCTATTAGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGAAACCAAAACTGTTATCCTAATTTCCTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGGGCAAGTCATGCAGAATTTGTTGTTCCCTATcaaaaatatgttaaaagtATCAAGAATCCAATGACAATAGGGACAAGATTCAAAATGAGATTTGAAACGGATGAATCGCCAGAAAGAAGAAGTAGTACTGGTATGTTGATCGGAATGAATGACTTGGATCCATATAGATGGCCTAAATCCAAATGGAGGTGCTTAATGGTTAGATGGGATGAAGATATTGACACTAATCCTCAAGACCGAGTATCTCCGTGGGAGATTGATCCTTCGTCTCCTTTGCCTCCCCTAAGCATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGACCGGTCTGCAGGTTGCCTCGCCCAATCACCTCATCACTGGTATGAATCCTAATGGAAGCAGTGGAATGATGGGGTTTGAGGAATCTATAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATACTATGGATGTGACAGTAAAACAAACCAGCCGGGTTTTGAGTTGAGCTCTTCAAGTCATCGTCAAAACCTTGCATCAACTGGAATAGGAAAAGTAGTTACCTCTTCTGAGCTTATGAGTGTTAATCCTTTCAGTTATGCAGGCTTTATGGAAAGTAACAATTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCGCTTGCGGGAAAAGTTGATTTCAATATTGGTTCTTGGGGaaccaaaccaaattttcaatcTGCTTATTTTCCTTTTGGAGATATTCACAAAGATAATCAAGTTAACATGTTTAGCTCAAAACACGCCACTTTCCTAAGCGATAATGTCGTGTTTAACACACCGACAACATTGGCAGCGAACATGAGAAAAGAAGTTGGAAGATCTGAATTTAATCTCCCAAATGAGCATAAGCTGCAGGAAAATATAACTGATGCTGCTTCATTAGGGGCTACTAATATAAATATTGCAAATGATAACAATCTGAAGGGAAAGGTAAATTCGTGCAAATTATTCGGATTTCCTTTGTCTGGCGAAACTAGTAGCCAGAACACGGCAAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTCGGAAGAGCCATTGATCTGTCAAGGTTGAGCGGCTACATCGATCTTCTAAGTGAACTAGAGAAACTATTTGGAATGGAAGGCCTTCTTAGAGATTCTAATAAGGGATGGAGGATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACTAATGAAGAAGTAGAGAAGATGACATTTGGGATGACAAATGATGATAATCATAGCTGTTTGGAACAGGCACCAGTGATTATGGAACCTTCTAAGTCATCCTCAGTTGGTCAGCCAGATTATTCTCCAAAAGTAGTTAGAGTCTAA 2340 0.3919 MEIDLNHEVTEIDKNALCIKECEKGCCLSHSNCSSTSPLVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQFASFSPFKQLEIPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAEFAEMHMEGKEVEELEGDEEGDEGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRSENGELRLGIRRAIRPRNGLPESIVGNQNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYQKYVKSIKNPMTIGTRFKMRFETDESPERRSSTGMLIGMNDLDPYRWPKSKWRCLMVRWDEDIDTNPQDRVSPWEIDPSSPLPPLSIQSSPRLKKPRTGLQVASPNHLITGMNPNGSSGMMGFEESIRSPKVLQGQENTGFMSLYYGCDSKTNQPGFELSSSSHRQNLASTGIGKVVTSSELMSVNPFSYAGFMESNNFPRVLQGQEICKLKSLAGKVDFNIGSWGTKPNFQSAYFPFGDIHKDNQVNMFSSKHATFLSDNVVFNTPTTLAANMRKEVGRSEFNLPNEHKLQENITDAASLGATNINIANDNNLKGKVNSCKLFGFPLSGETSSQNTAKRSCTKVHKQGSLVGRAIDLSRLSGYIDLLSELEKLFGMEGLLRDSNKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTNEEVEKMTFGMTNDDNHSCLEQAPVIMEPSKSSSVGQPDYSPKVVRV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03552 779 Gene3D - 646 740 - -
Tsu02g03552 779 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Tsu02g03552 779 SUPERFAMILY DNA-binding pseudobarrel domain 150 269 IPR015300 -
Tsu02g03552 779 PANTHER AUXIN RESPONSE FACTOR 26 767 - -
Tsu02g03552 779 MobiDBLite consensus disorder prediction 378 411 - -
Tsu02g03552 779 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 767 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g03552 779 Gene3D - 156 260 IPR015300 -
Tsu02g03552 779 SMART B3_2 158 260 IPR003340 GO:0003677
Tsu02g03552 779 Gene3D - 322 393 - -
Tsu02g03552 779 MobiDBLite consensus disorder prediction 135 156 - -
Tsu02g03552 779 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu02g03552 779 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Tsu02g03552 779 ProSiteProfiles PB1 domain profile. 651 733 IPR000270 GO:0005515
Tsu02g03552 779 SUPERFAMILY CAD & PB1 domains 651 730 - -
Tsu02g03552 779 CDD B3_DNA 156 258 IPR003340 GO:0003677
Tsu02g03552 779 Pfam AUX/IAA family 644 735 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03552 Tsu-Chr2 39893349 39898538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03552 40 779 B3 DNA Binding Superfamily AT5G60450 60.265 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu02g03552 AUX_IAA 1.2e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03552 - - gmx:100783513 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03552 02 39893349 39898538 Tsu02g03552 02 39893349 39898538 ECH
Tsu02g05057 02 59653574 59658397 Tsu02g03552 02 39893349 39898538 PCT