Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03548 ATGGATTTGGTAGCTGGTGTTAAGGAAAAATTGACATATTTCCGTATAAAAGAGCTCAAAGATGTGCTGACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGACCTCGTCGATAGGATATTGTCCGTTATCTCAGATGAACAAGTATCCAAAATGTGGGCTAAGAAGAATGCTGTTGAGAAAGAACAGGTGGCAAAATTAGTGGACGACACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCATCAAAGGGTCCGGCTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGAGGAGTCCtttcaaattcaatcagctacaAAGATTCGCTGTCTCTGTGGAAGTACATTGGAAACAGAGGATTTGATCAAGTGTGATGATGCAAGATGTCAAGTGTGGCAACACATAAGTTGCGTTATTATTCCGGAGAAACCTATGGAAGGCATCCCACCAGTTCCTGATAAATTTTATTGTGAACTATGTCGGCTCAGTCGTGCAGACCCGTTTTGGGTTTCAGTATCTCATCCTTTATTACCTGTAAAGTTGATCACAACCAGTATCCCAACTGATGGTACCAACCCAGTGCAGTGTGTGGAGAGAACATTTCAACTCACAAGAGCAGACAAGGACATGGTATCAAAGCAAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGATAAGGTTCCATTCAGGATGCAGTGGCCACAGTATACAGACCTAGCAATCAATAGTCTTCCTGTTCGAACAACTAACAGACCCGGTTCACAATTGCTTGGGGCTAATGGCCGTGATGATGGTCCAATTATCACGCCGCATACAAAAGATGGAATTAATAAGATTTCATTAACAGTATGTGATCCTCGCATCTTTTGTTTAGGTGTTCGCATTGTTAGAAGGCGCAGTTTACAACAGATCCTAAACTTAATTCCGAAGGAGCCTGACGGTGAGCCTTTTGAAGATGCTCTTGCACGCGTCTGTCGTTGTGTTGGGGGTGGAAATGCAGCTGACAATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGgttgttttgatcttgaagTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAATATCATCATTGATCCTTATTTCAATCGCATCACTTCTATGATGATTAATTGCGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGCTCTTGGCGTGTTAAGGCAAAAAGTGAAAATGAACGCTTCGATTTAGGAACACTTGGACAATGGCACTCTCCTGATGGATCCCTCTGTGCTTCTACTGACGGAGATATCAAAAGAGTAGAAACAATGAAGCAAGTAAAACAGGAAGGTTTTTCAGACGGACCTGCTGGTTTAAAACTTGGCATTAGGAAGAATCGCAATGGAATTTGGGAAGTCAGTAAGCCCGAGGACACAAACACCTCTTCTGGTCATAGATTAAAAGAGGTTTTTGGAAATCCTGAACATGTTGTTATTCCAATGAGCAGCAGTGGCACCGGAAGTGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGTGGTGGGCATGTTGATTATTCCACTACCAATGGAATTGAGATGGATTCTCTGTCCCTCAATAATGTTGATTTAGCTCGGGGATATACTGCACTTAACACATCTACTCAGGTGGGTGGCGCAGAAGTAATTGTTCTTAGCGACTCTGATGAAGAAAACGATATATTGGTGTCTCCTGCTATTGCAAATAACAGCAACCAAAATGATACTGCAGATGGTTACTCCATGCCGCCGCCTGTAATGGTTGACCCATTTGCTGAAGATCCGAATCTTGGTGGAAATCCATGCTTGGGGCTTTTTCATAATGATGATTTTGGGATGTCTTCCCTGTGGTCGTTGTCTTCTGCAACTCAGGCTGCTCCAGGATTTCAATTGTTTGACTCTGATGCAGATGTATCTGATGCGTTGGTCCATTTGCAGCATGGTCCTAGTAATGGTACCTCACCATTAAATGGTTATGCATTGGCTCCCGAAACTACTCTGGGATCTAGTAGTCTCATACAAGATTCCTCTGCTGGTCGGTCAGATGCTGACTTAAACGGTGGTTTGGTTGATAACCCATTGGCATTTAATGGAGATGATCCCTCACTTAAGATTTTTCTCCCAACAAGACCAGCTGAGTCATCTATGCAGAATGAATTGAGAGATCAAGCAAATCTATCCAATGGTGTCTGCACTGAAGATTGGTTTTCCCTTTCTCTTGGAGGTGGTGCTGGCGGCAGTAATGGTGATGCTTCCACTCAAAATGGATTGGATTCTAGACATCAAGTCCCAGCCAGAGACAATGGCACAAATAATTTGGCTGAtactgCTTCTTTGCTTCTTGGTATCAATGATGTGAGATCTGACAAAGCAGGTAAACAAAGGCCAGGTAGTCCTTTCACATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTGTACCTTTCTATTGATTCAGATTCGGAATAA 2640 0.4242 MDLVAGVKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSVISDEQVSKMWAKKNAVEKEQVAKLVDDTYRKMQISGATDLASKGPAVSDSSNVKVKAEVEESFQIQSATKIRCLCGSTLETEDLIKCDDARCQVWQHISCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSVSHPLLPVKLITTSIPTDGTNPVQCVERTFQLTRADKDMVSKQEFDVEAWCMLLNDKVPFRMQWPQYTDLAINSLPVRTTNRPGSQLLGANGRDDGPIITPHTKDGINKISLTVCDPRIFCLGVRIVRRRSLQQILNLIPKEPDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMINCGEDVTEVEVKPDGSWRVKAKSENERFDLGTLGQWHSPDGSLCASTDGDIKRVETMKQVKQEGFSDGPAGLKLGIRKNRNGIWEVSKPEDTNTSSGHRLKEVFGNPEHVVIPMSSSGTGSGRDGDDPSVNQGGGGHVDYSTTNGIEMDSLSLNNVDLARGYTALNTSTQVGGAEVIVLSDSDEENDILVSPAIANNSNQNDTADGYSMPPPVMVDPFAEDPNLGGNPCLGLFHNDDFGMSSLWSLSSATQAAPGFQLFDSDADVSDALVHLQHGPSNGTSPLNGYALAPETTLGSSSLIQDSSAGRSDADLNGGLVDNPLAFNGDDPSLKIFLPTRPAESSMQNELRDQANLSNGVCTEDWFSLSLGGGAGGSNGDASTQNGLDSRHQVPARDNGTNNLADTASLLLGINDVRSDKAGKQRPGSPFTFPRQKRSVRPRLYLSIDSDSE 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03548 879 Pfam PHD-finger 116 168 IPR019787 -
Tsu02g03548 879 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 826 - -
Tsu02g03548 879 Pfam SAP domain 14 42 IPR003034 -
Tsu02g03548 879 MobiDBLite consensus disorder prediction 542 568 - -
Tsu02g03548 879 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Tsu02g03548 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 173 IPR013083 -
Tsu02g03548 879 SUPERFAMILY FYVE/PHD zinc finger 108 171 IPR011011 -
Tsu02g03548 879 Pfam MIZ/SP-RING zinc finger 361 409 IPR004181 GO:0008270
Tsu02g03548 879 SMART sap_9 11 45 IPR003034 -
Tsu02g03548 879 MobiDBLite consensus disorder prediction 542 556 - -
Tsu02g03548 879 Gene3D SAP domain 1 63 IPR036361 -
Tsu02g03548 879 SMART PHD_3 116 168 IPR001965 -
Tsu02g03548 879 CDD PHD_Bye1p_SIZ1_like 116 167 - -
Tsu02g03548 879 ProSiteProfiles Zinc finger SP-RING-type profile. 348 431 IPR004181 GO:0008270
Tsu02g03548 879 ProSitePatterns Zinc finger PHD-type signature. 117 167 IPR019786 -
Tsu02g03548 879 MobiDBLite consensus disorder prediction 802 830 - -
Tsu02g03548 879 MobiDBLite consensus disorder prediction 844 879 - -
Tsu02g03548 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 449 IPR013083 -
Tsu02g03548 879 PANTHER SAP DOMAIN-CONTAINING PROTEIN-RELATED 9 826 - -
Tsu02g03548 879 SUPERFAMILY SAP domain 1 64 IPR036361 -
Tsu02g03548 879 CDD SP-RING_Siz_plant 362 410 - -
Tsu02g03548 879 MobiDBLite consensus disorder prediction 803 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03548 Tsu-Chr2 39869238 39881259 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu02g03548 PHD 3.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03548 - - aprc:113857557 1467.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03548 02 39869238 39881259 Tsu02g03548 02 39869238 39881259 ECH
Tsu02g05056 02 59640148 59650145 Tsu02g03548 02 39869238 39881259 PCT