Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03544 ATGAAGACAAAGACGCCATTGAAGCAGCTCAAGCTTTCTGTTCCTGCTCAACAAACACCCATCACTTCTTTCCTGACTGCAAGTGGTACATTCCGTGATGGAGATTTGCTCTTGAACCAGAAAGGGATGCGTCTCATTTCTGAAGAAAAGGAATCAAGGCCTTCAGATGCTAAGGATCTCGACTTTGACTTCACATTGGACGACCTTGAGACCGTCAAATGGCTCGGAAAGTTGTTTGCCTTAAAGGCCATTCAGATGAATGTACAAGAAAATATTCGTAAACAGATCGTTCAGGAACTGAAAATAAACAACCAAGCATCACAGTGTCCACATGTTGTAGTTTGCTACCACTCATTCTATAATAATGGAGTTATATCTCTTGTATTAGAATACATGGACCGTGGTTCTCTCGTAGATGTAATCAGACAAGTTAATACAATTCTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTTTTACAGGGTCTTGTTTACTTGCACAATGAAAGACATGTGATACATAGGGATATCAAACCATCCAATCTTTTAGTAAATCACAAAGGGGAAGTGAAGATTACTGATTTTGGCGTTAGTGCTATGCTGGCAAGCACAATGGGCCAAAGAGATACATTTGTTGGAACTTATAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCTGCGACATCTGGAGTTTAGGGATGGTAGTACTCGAGTGTGCCATAGGACGGTTTCCTTATATACAATCTGAAGATCAGCAAGCATGTCCTAGTTTCTATGAGCTTTTGCAAGCAATTGTCGAAAGTCCTCCACCTTCTGCTCCACCTGATCAATTCTCCCCTGAGTTCTGTTCATTTGTGTCATCCtgCATAAAAAAGGATCCTCGCGAAAGATCAACGTCATTGGAGCTTTTGGATCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGAATTTTAGTAGCTGGTTTAGAACCTCCTGTAAATTTTCCTAGATAA 1020 0.4 MKTKTPLKQLKLSVPAQQTPITSFLTASGTFRDGDLLLNQKGMRLISEEKESRPSDAKDLDFDFTLDDLETVKWLGKLFALKAIQMNVQENIRKQIVQELKINNQASQCPHVVVCYHSFYNNGVISLVLEYMDRGSLVDVIRQVNTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASTMGQRDTFVGTYNYMSPERISGSTYDYSCDIWSLGMVVLECAIGRFPYIQSEDQQACPSFYELLQAIVESPPPSAPPDQFSPEFCSFVSSCIKKDPRERSTSLELLDHPFIKKFEDKDLDLGILVAGLEPPVNFPR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03544 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Tsu02g03544 339 CDD PKc_MAPKK_plant_like 73 318 - -
Tsu02g03544 339 SMART serkin_6 66 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03544 339 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 338 - -
Tsu02g03544 339 Gene3D Phosphorylase Kinase; domain 1 67 133 - -
Tsu02g03544 339 SUPERFAMILY Protein kinase-like (PK-like) 73 327 IPR011009 -
Tsu02g03544 339 Pfam Protein kinase domain 75 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03544 339 Gene3D Transferase(Phosphotransferase) domain 1 135 329 - -
Tsu02g03544 339 ProSiteProfiles Protein kinase domain profile. 22 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g03544 339 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03544 Tsu-Chr2 39820653 39825156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03544 1 339 MAP Kinase Kinase Gene Family AT5G56580 78.310 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Tsu02g03544 Pkinase 1.2e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03544 K04368 - gmx:100786284 603.979