Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03537 ATGGACACAACGGAAGACTTACACTTCTTGTTAACGGCGCAACGCCACGAACTCACGGCGGCGGAATCCATGGAATCCGATCTCGACTTCGCTTACCGTCTCCAGTTACAAGAAGCCTTAGCCGCTTCTCTCACCGACCATCCTTCTTCCTCCACAGACGTTATTTTCGAAGAACCAATCATCGACGACGACGACGCCGTTTTCAATGCAACGTCTCTCCAATTGAAAGAGCTTGAAAAGATGGAGATAGAAATGCATGACAGGGAGCAGAGTGAGAGAGTAATGCGTGAAGCGAAAGATGATCTTAACCGTCGGATTCATGATCAGAAAATGGCGACGGAGATTCTCAATTTCACTGAGGAGGATTGGGAGAAATGGGGGGATAATTTCGAGAAACCGTTCGGGGAAGGTTGTTCGAAGAGCGGTGGCGATGAAGGTGCTGTTGTTAGGGTTTATTTTAAGGGTTTAGTGAGTGAAGAAAGTGTGAGAGGTCAGAATTTTTCTGTGGCTGGGATTGGTGTTGCGGTTTGTGATTTGAATGATAATGTGATATTTGAAGTTTCGAAAGCTGTTGTTGGGAATGGAACAAATAAAGTTGCTGTGGAACTTAAGGCGTTGATTGAAGCTTTCAATGCTGTTCTTGCTTTGGATTTGAAGAATGTTATTTGTTTTGGTGATCATTATCCACTTTTTCAATTTTTAAGTGGAAAATGGCCTGCAAAACAGAGGAAGGTTGCTATGTTAGTTAATCAGGTGAAtctgcttcaaaaaaaatttgcataCTGCAGTCCAAGGCTAGTGGCGAGACAGGATCTGAAATTTGCATTGAAGCTTGCAAAAGATGCAATTGTTTCTCAGTCCACGAGGCCTGCTGAATCTAGCAGCATAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGGAGGATACTGATCATAGTCAATTTTTTTCAGTTGATGGTTGTCAACACAGGTATTGCTTTTCTTGCATGAAGCAACACGTGGAGGTGAAGTTGCTCCATGGAATGGTGCCAATATGTCCTCATGAGGGATGCAAGAATGAACTTCTAGTTGACAGTTGCCGGAAATTCTTGACTTCTAAATTAGTTGAAACTATGCAGCAACGAAAAATGGAAGCTTCAATTCCGCTTACTGAGAAAATTTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAAGTGAAGTTTTAAACTACTCCAAAAATCTTATGGGCTCTGAACATTCGTTACCCAAGAAATGCGTAAAATGTCATGGTCTTTTCTGCTTTGGCTGCAAGGTTCCTTGGCACAGTGGTATGACATGTTATACTTACAAAAGGTTGAATCCTAACCCTCCAGCAGATGATGTGAAGTTGAAGTTTCTGGCATCAAGGAGTCTTTGGAAGCAGTGCGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTACCACATGACTTGCAGATGTGGTTACGAATTTTGCTATAAATGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTTCATGTCCACTTTGGGAAGAGGACAATATTTGGTTAGAAGATCGCCATGCCGAGTCAGAGGATGATGGGGAAGATGAGGATGatcatgatttttattattaa 1632 0.4136 MDTTEDLHFLLTAQRHELTAAESMESDLDFAYRLQLQEALAASLTDHPSSSTDVIFEEPIIDDDDAVFNATSLQLKELEKMEIEMHDREQSERVMREAKDDLNRRIHDQKMATEILNFTEEDWEKWGDNFEKPFGEGCSKSGGDEGAVVRVYFKGLVSEESVRGQNFSVAGIGVAVCDLNDNVIFEVSKAVVGNGTNKVAVELKALIEAFNAVLALDLKNVICFGDHYPLFQFLSGKWPAKQRKVAMLVNQVNLLQKKFAYCSPRLVARQDLKFALKLAKDAIVSQSTRPAESSSIKSLKETCVICLEDTDHSQFFSVDGCQHRYCFSCMKQHVEVKLLHGMVPICPHEGCKNELLVDSCRKFLTSKLVETMQQRKMEASIPLTEKIYCPYPRCSALMSKSEVLNYSKNLMGSEHSLPKKCVKCHGLFCFGCKVPWHSGMTCYTYKRLNPNPPADDVKLKFLASRSLWKQCVKCNHMIELAEGCYHMTCRCGYEFCYKCGAEWKDKKATCSCPLWEEDNIWLEDRHAESEDDGEDEDDHDFYY 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03537 543 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 523 IPR031127 GO:0004842|GO:0016567
Tsu02g03537 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 382 IPR013083 -
Tsu02g03537 543 SUPERFAMILY RING/U-box 456 519 - -
Tsu02g03537 543 ProSiteProfiles TRIAD supradomain profile. 299 522 IPR044066 -
Tsu02g03537 543 SUPERFAMILY RING/U-box 385 447 - -
Tsu02g03537 543 SMART ibrneu5 370 442 IPR002867 -
Tsu02g03537 543 SMART ibrneu5 455 512 IPR002867 -
Tsu02g03537 543 Gene3D - 439 543 - -
Tsu02g03537 543 Pfam Reverse transcriptase-like 166 282 IPR002156 GO:0003676|GO:0004523
Tsu02g03537 543 SUPERFAMILY RING/U-box 302 382 - -
Tsu02g03537 543 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 28 523 - -
Tsu02g03537 543 ProSiteProfiles Zinc finger RING-type profile. 303 347 IPR001841 -
Tsu02g03537 543 Pfam IBR domain, a half RING-finger domain 461 510 IPR002867 -
Tsu02g03537 543 Pfam IBR domain, a half RING-finger domain 372 442 IPR002867 -
Tsu02g03537 543 ProSitePatterns Zinc finger RING-type signature. 321 330 IPR017907 -
Tsu02g03537 543 Gene3D - 149 289 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03537 Tsu-Chr2 39709685 39714859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03537 150 501 C3H Transcription Factor Family AT2G19610 36.034 2.46e-67 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03537 - - aprc:113858620 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03537 02 39709685 39714859 Tsu02g03537 02 39709685 39714859 ECH