Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03535 ATGGAGATTACTACTAGTGACACTTCTTCTCCAACTTCTTCATCTAACTCACCACAATTAATAGCTCAAAATCCTTCTCAAGTTGTTGTTATGAGTCCTTGTGCTGCTTGCAAGATTTTAAGAAGAAGATGTAGTGCTGAAAAATGTGTTTTGGCACCTTATTTTCCTCCTACTGATCCTGCTAAGTTTACCATTGCTCATAGAGTTTTTGGTGCTAGCAACATCATCAAATTTTTACAGGAACTTCCAGAAGCTCAAAGAGCTGATGCAGTAACAAGCATGGTTTATGAAGCAAGTGCAAGAGTAAGAGACCCAGTTTATGGTTGTGCAGGAGCAATTTGTCAACTCCAAAAACAAGTCAATGAACTTCAAGCACAATTAGCAAAATCACAAGCTGAGGTTATAAACATGCAACTTCAACAAGCCAATCTTGTTGCTCTAATTTGCATGGAAATGTCACCACAAGAATCACCACAAGAAATATCAATGgatgataataattttattcaaaGTCCTAACCATAATattggtttgaatttctttgatgagAACACTAGTCAAAATTCATTGTGGGGGCCACTTTGGACATGA 591 0.3519 MEITTSDTSSPTSSSNSPQLIAQNPSQVVVMSPCAACKILRRRCSAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPEAQRADAVTSMVYEASARVRDPVYGCAGAICQLQKQVNELQAQLAKSQAEVINMQLQQANLVALICMEMSPQESPQEISMDDNNFIQSPNHNIGLNFFDENTSQNSLWGPLWT 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03535 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 13 193 - -
Tsu02g03535 196 Coils Coil 113 140 - -
Tsu02g03535 196 Pfam Lateral organ boundaries (LOB) domain 33 131 IPR004883 -
Tsu02g03535 196 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g03535 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 193 - -
Tsu02g03535 196 ProSiteProfiles LOB domain profile. 32 134 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03535 Tsu-Chr2 39691985 39694296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03535 29 196 AS2 family AT1G07900 64.535 1.07e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu02g03535 LOB 1.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03535 - - gmx:100789504 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03535 02 39691985 39694296 Tsu02g03535 02 39691985 39694296 ECH
Tsu02g05045 02 59561474 59564045 Tsu02g03535 02 39691985 39694296 PCT