Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03526 ATGAAGCGTCCAAGAACCACAGGAGATTCTACTTCTTCTAGGGTTTCACCATCTCTTGAAGCTGGAATCATTAAGAAACTCCGGTTAGAGAATTTTATGTGCCATTCAAACCACGAAACTGTGTTTGGAAATCACGTTAATCTCATCACTGGTCAAAATGGAAGTGGTAAAAGTGCAATACTTACTGCATTATGTGTTGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAGGATTTCATTAAAACTGGTTCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGCGAGGATGCTTTCAAGCCTGAAATATATGGTGATGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGCTCTATTATATTGAAAGATTGCCAAGGTGTGAAAGTTTTCAATCGGAAAGCAGATCTACAAGAAATCATTGAACATTTCAATATTGATGTGGAGAACCCGTGCGTGGTTATGAGTCAAGACAAAAGCAGAGAATTTCTGCATTCCGGGAATAACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAAtgatcttctggaaagtatatCTGCTGAAATAACCTCTGCACGTGCAATAGTTGAAGAACTAGGGTCTGCAATAAGACCTATAGAGAAAGAACTCAATGAGCTGCaagttaaaattaaaacgatGGAACATATTGAACAAATTTCTGTAGAGATTCAACATTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTTGAGGGTCAAAATGTAATGATTGAAAAGCTGAAGGATCGGGTTCCTTTATGCCAAGCTAGGATTGATAAACAACTGCATCTGCTTGAAAAATTAAGTGAAAGCTGCTCTAAGAAGAAAGCTGAAATTGAAAGTATGATGGCAtcacaaattaaacaaatgaaggaaaatttgaGTCACTCTATGTCCTTGgcaaaaaaagaagaatttgaACTTCAGCGAGACTGCAAATCCAAAGCTAGTAAAATACAGAAGATGGTACAACAGCTCAAAACGCTTGAACAACAAATGCAGGATATTCATGAGCAGCATGTGAAAAATACCCAGGCTGAAGAATCTGAGAAGGAAGAAAGACTGAAGGTGCTTCGAGACGAAGTTGATGCCGCTGAGTCAGAATTGAAaagATTGGAAAAAGCAGAGGATATATTAATGAACGACATTAATAGGCAAAATGAGGAAATCAGAAGCATTGCTAATAAGATCCAAGATCATGAAAATAAGTACAGTGAAATCCGCTATAATCTTCGTGGTCTTCAACAACGACAAAGCAACAATATCGCAGCATTTGGAGGAAATAAAGTGATGCATTTGTTAGAAAAAATTGAGAGATGTCATCAAAGGTTTAAGATGCCTCCCATTGGTCCAATTGGTGCCCATCTGAATTTGCTTAATGGTGATAAATGGGCGGTTGCTGTTGAATATGCCATTGGGAAATTGCTCAATTCTTTTATAGTGACTGATCACAAGGACTTTCGTCTTCTGAAACAATGTGCTAAGGAAGCAAACTATGGTCatcttcaaattattatttatgatttttcaaCCCCAAGGTTGATGATACCAGAGCACATGCTTCCTAATACAAACCACCCATCAACTCTTAGTATCCTACAATGCGAGAATGACACTGTGCTTAATGTCTTGGTGGATCAGGGAAATGTTGAGAGACAAGTGCTTGTTAACGACTATAATACTGGGAAAGTGGTTGCCTTTGAGGAAAGGATCCAAAATGTGAAGGAGGTATTTACAGCGGAAGGATGTAAAATGTTTTCTCGAGGTCCGGTAGAGACAACTCTTCCTTCAAGGAGGAAGCAAGTATATGGTCGTTTAAGCAGTTCTGTTGAAGGTGACATTGAGAAGCTTCATAATGATGCATCTAATGAACAAAAAGCAGCAAATGACTGTAAAAGGGATAAAAGAGGGGCAGAGGTCAAGCTTGCGGATCTTGAAGGGAAGATGAGGTCTATAAAGagATTACGTTTTGAAGCTGGAAAAAGTGTTAATTCTAAGAAGCTATTTTTGGAGGATGAAATGCCACAACAAGCTGCTGAAAGTAGCCCGGCACCTTTGTGCTCAGTTGATGAGATTGTTGAAGAAATCTCTgaaataaacaaaaaaataaaagaagagcAGGTGTTGTTAGAAGGCCTTGAGCAGAGGAGGCTTGAAGTAGAGAGAAAAACTAGTGATCTTAAAGGAAAAGTTGACGAATTGTGTGaATCAGCGAACAATGAACATGCTTCCCTTGAGAAAGCTGAGACTGAACTTCTAGAGATTGAAAGACAAATACATTCAGCGAAGGAGAAGAAGGTTCACTATGATAATATCATGAAACACAAGGTCCTACATGATATAAAGGTGGCAGAGGAGCACTATCTGGAGCTTACAAAAAGGCGTGAGGAAAATGTTGAAAAGGCTTCCGTAATTTGCTGTCAGAATGAACTTGCTTCACTAGGAGGTTGTGATGGGATTCCCCCAGAGGAAATCAGTGCTGAATTAGAAAGACTTAATCGCACACTTAGACGTGAGAGCCAAAGATATTCCGAATCAATTGATGATCTACGGATGCAATATGAGAAAAAGCAACGAAAGATTATAAAAAGGCAGCAAGTTTATAAAGTCCTTTGTCAGAAACTAGATGCTTGCCAGAATGCTTTAGAGTTTCGAAGGAGAAAGTTTCAGGCAAATGCAACCCATCTCAAGAAGCAACTTTCTTGGAAATTTAATGGCCATTTGAGAAAAAAGGGGATCAGCGGACTTATCAAAGTTGATTATGAGGATATGACATTATCGATCGAGgtaCAAATGCCCCAAGATACATCAAACAGAGCTGTTCGGGACACAAGGGGGCTTTCAGGCGGGGAGCGCTCGTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGGCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCGGTAAGCCGAAAAATTAGCATGGACACTCTTATTGATTATGCTGTGGCACAAGGATCCCAGTGGATATTGATCACCCCGCACGATACTAGCTTGGTTAAGGGAGGGAATAGGGTAAAGAAGATGCAAATGGCAGCTCCCCGTTCTTGA 3177 0.3805 MKRPRTTGDSTSSRVSPSLEAGIIKKLRLENFMCHSNHETVFGNHVNLITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGSSNAVIHVEIQNEGEDAFKPEIYGDVIIVERRISESTSSIILKDCQGVKVFNRKADLQEIIEHFNIDVENPCVVMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISAEITSARAIVEELGSAIRPIEKELNELQVKIKTMEHIEQISVEIQHLKKKLAWSWVYDVDKKLEGQNVMIEKLKDRVPLCQARIDKQLHLLEKLSESCSKKKAEIESMMASQIKQMKENLSHSMSLAKKEEFELQRDCKSKASKIQKMVQQLKTLEQQMQDIHEQHVKNTQAEESEKEERLKVLRDEVDAAESELKRLEKAEDILMNDINRQNEEIRSIANKIQDHENKYSEIRYNLRGLQQRQSNNIAAFGGNKVMHLLEKIERCHQRFKMPPIGPIGAHLNLLNGDKWAVAVEYAIGKLLNSFIVTDHKDFRLLKQCAKEANYGHLQIIIYDFSTPRLMIPEHMLPNTNHPSTLSILQCENDTVLNVLVDQGNVERQVLVNDYNTGKVVAFEERIQNVKEVFTAEGCKMFSRGPVETTLPSRRKQVYGRLSSSVEGDIEKLHNDASNEQKAANDCKRDKRGAEVKLADLEGKMRSIKRLRFEAGKSVNSKKLFLEDEMPQQAAESSPAPLCSVDEIVEEISEINKKIKEEQVLLEGLEQRRLEVERKTSDLKGKVDELCESANNEHASLEKAETELLEIERQIHSAKEKKVHYDNIMKHKVLHDIKVAEEHYLELTKRREENVEKASVICCQNELASLGGCDGIPPEEISAELERLNRTLRRESQRYSESIDDLRMQYEKKQRKIIKRQQVYKVLCQKLDACQNALEFRRRKFQANATHLKKQLSWKFNGHLRKKGISGLIKVDYEDMTLSIEVQMPQDTSNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISMDTLIDYAVAQGSQWILITPHDTSLVKGGNRVKKMQMAAPRS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03526 1058 CDD ABC_SMC6_euk 24 178 - -
Tsu02g03526 1058 SUPERFAMILY Smc hinge domain 429 598 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu02g03526 1058 Coils Coil 853 887 - -
Tsu02g03526 1058 Gene3D - 757 1054 IPR027417 -
Tsu02g03526 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 19 1058 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Tsu02g03526 1058 Gene3D - 23 222 IPR027417 -
Tsu02g03526 1058 CDD ABC_SMC6_euk 959 1058 - -
Tsu02g03526 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 1041 IPR027417 -
Tsu02g03526 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 19 1058 - -
Tsu02g03526 1058 Coils Coil 368 444 - -
Tsu02g03526 1058 Pfam RecF/RecN/SMC N terminal domain 24 1053 IPR003395 -
Tsu02g03526 1058 Coils Coil 339 366 - -
Tsu02g03526 1058 Coils Coil 641 682 - -
Tsu02g03526 1058 Coils Coil 765 792 - -
Tsu02g03526 1058 Coils Coil 716 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03526 Tsu-Chr2 39567342 39584726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03526 21 1058 Structural Maintenance of Chromosomes family AT5G61460 55.758 0.0 1123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03526 K22804 - gmx:100816916 1476.07