Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03514 ATGTTAGATCTTAATCTAAACGATGAGAACTCGACCGATTCAACTCAGAACATTAACTCACCAATGATTTCGGAGAATTTTCCTCAAACTTCATGGAATCAAATGGTGGAATCGGGAACATCGGATTCCTCAATAGTCAATGCGGATGGTTCAAGCAACAACGCAAATGATGAGGACTCGTGTTCTACGCGCGTTGATAATGTTTTCACTTTCAGTTTTGATATTCTTAAAATGGAAGGTTCAAACGACGTCGTAACGAAGGAGTTTTTTCCTGTGAATGGTGgaggtgatgatgatgaaggttggTGTAATAATTGGAAGTTGCAACCTACGTCTTCGACGTTTCCGGTGAAGAATGGTTTTGTTGATCTATCGTTTAATCAGAATGAAGAGATGACGATTGTTCAGCCTCAACAACAAGCTAAGAAAAGTAGAAGAGGACCAAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGAACTGGAAGATGGGAATCACATATTTGGGATTGCGGGAAACAAGTTTATCTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGagCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGGTGCTGAcataaatttcaatttgaatgattATGAGGATGATCTTAAACAGACGAAGAATTTATCCAAAGAGGAATTCGTGCACATACTTCGTCGTCAAAGTACTGGTTTCTCAAGAGGGAGTTCAAAATACCGTGGAGTAACACTCCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAGTTCCTTGGCAAAAAGGCTTATGACAAAGCAGCTATCATTAACAATGGAAGGGAAGCAGTGACTAATTTTGAGCCCAGTATATACCAAGGAGAGATGAAATCTGCAGCCATCAGTGAAGGTGGCAGTCAAAATCTTGATCTCAATTTGGGCATAGCCACACCAGGACCTGGTCCCAAAGAAAATTCAGGGAAATTTCACTCCCCTTCTGTTCCTCACACAAATTCAAGGATGGAAACCAATGTCTTAGGAACCGGTAATCCATCTTTGAAAAGGCTATTAGTAACTGAAGAGCGTCATTCTCCATGGAATGACATGTATCCCGATTTCTTTCCGAATGAGGAAAGACCAGGTAGTATCGGCAAAGATCCTTCAAAAGGACTCCCCAATTGGGCGTGGCAACCTCATAGCCAGATCACTGCTACCCCAATGCCACCGGCCTCTGCAGCAGCAGCATCATCAGGATTCTCAATTTCATCTCCCGTTCCATCGTTGACTCCCATATTTCCACCAAGATCTATGAACACGATTCCTCACAGTCTCTATTTTACTTTTCCCAATGCACCTAACAGCAACGCGTCTCAATACTATTATCAGGTTAAGCCCCAGCAGGCACCACCCTAG 1413 0.419 MLDLNLNDENSTDSTQNINSPMISENFPQTSWNQMVESGTSDSSIVNADGSSNNANDEDSCSTRVDNVFTFSFDILKMEGSNDVVTKEFFPVNGGGDDDEGWCNNWKLQPTSSTFPVKNGFVDLSFNQNEEMTIVQPQQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYEDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIINNGREAVTNFEPSIYQGEMKSAAISEGGSQNLDLNLGIATPGPGPKENSGKFHSPSVPHTNSRMETNVLGTGNPSLKRLLVTEERHSPWNDMYPDFFPNEERPGSIGKDPSKGLPNWAWQPHSQITATPMPPASAAAASSGFSISSPVPSLTPIFPPRSMNTIPHSLYFTFPNAPNSNASQYYYQVKPQQAPP 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03514 470 MobiDBLite consensus disorder prediction 330 349 - -
Tsu02g03514 470 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
Tsu02g03514 470 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 427 - -
Tsu02g03514 470 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Tsu02g03514 470 SMART rav1_2 246 294 IPR001471 GO:0003700|GO:0006355
Tsu02g03514 470 MobiDBLite consensus disorder prediction 376 419 - -
Tsu02g03514 470 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Tsu02g03514 470 MobiDBLite consensus disorder prediction 134 155 - -
Tsu02g03514 470 SUPERFAMILY DNA-binding domain 245 290 IPR016177 GO:0003677
Tsu02g03514 470 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Tsu02g03514 470 MobiDBLite consensus disorder prediction 319 349 - -
Tsu02g03514 470 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 427 - -
Tsu02g03514 470 CDD AP2 245 290 IPR001471 GO:0003700|GO:0006355
Tsu02g03514 470 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Tsu02g03514 470 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03514 Tsu-Chr2 39386900 39390863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03514 1 470 AP2-EREBP Transcription Factor Family AT5G60120 43.860 1.84e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g03514 AP2 6.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03514 K09284 - gmx:100788303 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03514 02 39386900 39390863 Tsu02g03514 02 39386900 39390863 ECH
Tsu02g05033 02 59401374 59405724 Tsu02g03514 02 39386900 39390863 PCT