Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03489 ATGAATAGTTCTGATAAGACGGTGGATTGTAATAGTAGTGGTCATGAATTTATTGAAATTGACAAGTTTCAAGATGATGGCGTATCTTGGGAGCCTGCAACAGATATGTGTTTTTCTTCCGCGGACGAGGTTAAATCTTTTTATGGAGAGTATGCTTTGAGAAAGGGGTTTGGGTGGAAGATTAGAACATCAAGAAAAGGGCAAGATGGAGAAATATGCTACTTGATTCTAGCATGCTCAAGAGAGGGGCATATAGTCTCAAATGTTCCATGTACATTGAAGACAAATCCGACAAAGGGGAAAAAATGTCCCGCTAGGATGTGTATTAAGATGGAAAAAGATGGATTGTGGTACGTCACAAAATTTGATCCTAGCCATTCTCACGAGTGCAGCCCTACAAAGGCAAGGTTGTTCAAGGCTAACAAGGAAATTAACTTGCATGTGAAGAGGACTATTCAAATGAATGATGATGCAGGAGTGACGATCAACAAGACTTTCCAATGTCTTGTTAAAGATGCGGGGGGGCATGAAAATATATCGTTTTGTGAAAGAGACGTCAGAAATTATATTAACAAGGAACGGCGTGCAATTGGAAAAGAAGGTGATGGTCAGGCTCTGATAAACTATTTTTGTGAAATGAGGGAACAAAATGCAAATTTCTTCTACGAGATAGATGTAGACAACGAATTTCATGTAAGAAATGTGTTTTGGGCCGATGCAAGGAGTAGAGCTGCTTATGAGGATTTTGGAGATGTTGTCACTTTCGACACAACATACTTGACCAATAAATACGACATGCCTTTTGCTGTGTTTGTTGGTGTGAACCACCATGGTCAATCGACATTACTTGGATGCGGGTTGGTTTCAAGAGAGGACACTGAATCATTTGTATGGCTATTCAAGTCGTGGCTTCGTTGTATGGTAGGAAAGGCCCCCGTTGGTATTATAACTGACCAATGTAAAGCTATGCAAAATGCCATTGAGTTAGTGTTCCCTACAACACGCCATAGGTGGTGTTTATGGCATATCATGAAAAAAATTCCCGAAAAACTTAGCAGATGCAGCGAGTATAAAAAGATCAAGGCTGCTATGAAAGAAGCAATTTACGATACATTCACAAcaaatgattttgaagaaaaatggtGTTCCTTCATTGACAAATTTGAGCTTCAGCAGAATAATTGGTTGAGTGGATTGTATAATGAGCGTCATAGATGGGTTCCAACCTTGTTAAGGAAAACTTTTTGGGCGGGTATGTCAACTACGCAACGAAGTGAGAGTATACATGCTTTCTTTGACGGATATATCAACTCAACAACAACTTTACGTCAATTTGTGAAGCAATATGATAATGCCCTCAGAAGTCGAGCAGAAAAAGAATTTCAAGCGGATTTTAATTCGATGGACACTACAATTCCGTGTGGGTCAACCTCGTCAATTGAAAACCAATTCCAATGTTTGTACACACATGCCAAATTCAAGGAAATTCAAGCTGAATTTAGAAGTAAAATGAATTGTGTTACCTCGTTGAAGATAGTCGAGGGCTGCCTTGCTACTTATCAAGTGTTGGAGGATGTGTTGGTGGGTGATAGACGAAAGGAAATTGTCAAAAAAGTTGTGTTTAATAGGGAAAATCATGATTTAAGTTGTGAATGCTCGTTGTTTGAGTTTAGAGGTATATTGTGTCGCCATGCATTATGTGTTTTTGCTCATGAAAGGATTGAAAATGTCAAGGAGCAATATATTTTATCAAGAtggaagaaaaatattaaaaggaagCATTCATACATTAAGAGCAGTTATAGTGCAGTACAATTGAAGCCACAAATAGAGAGATTTGACAAATTGTGCAAGCATTTCTATAATGTTGCTGAAGTGGCTGCAGAGTCTGAAGTTGCAACCAAGGCACTCCATGAAACATTGCATGACTTTGATTCTAATTTGCCCACTATGGATGATACCACTGGAAATGGCAAAGAAAGTTTCAATGAGGACTCAAATCCAAACACCGGTACTAAAATCCGCAGTCCAGTGCATGTCAATCGTAAAGGCCGTCctcaaaaaaataggaaaatatcTGTACTTGAAACAGTTTGTAAgaagccaagaaagaaaaccaGGACAAGTTATAATGGAGAGACTGCTACGGAGTGCAATGTTGGAATGATTAGTAGTCAGACGGAAAGCAGTATACGCGTGGAATCATCTATTGAGGTTGTCACTGGCGATAGTTTGATGGATTCAAATACCGTGATTTGTTGGGTGGAAGTCGCTGAGGGTAGTTTGTATTTGTTAAGGGATAACTTGCTTGTGTATGGGTGTCTTGTTACCTGGTGGGATGCTATTCAGGGACATTATGTGGGGAGGCATGTTTATGTAAATGGGGAGTTGATGAATTATGTTGGTTAA 2409 0.3807 MNSSDKTVDCNSSGHEFIEIDKFQDDGVSWEPATDMCFSSADEVKSFYGEYALRKGFGWKIRTSRKGQDGEICYLILACSREGHIVSNVPCTLKTNPTKGKKCPARMCIKMEKDGLWYVTKFDPSHSHECSPTKARLFKANKEINLHVKRTIQMNDDAGVTINKTFQCLVKDAGGHENISFCERDVRNYINKERRAIGKEGDGQALINYFCEMREQNANFFYEIDVDNEFHVRNVFWADARSRAAYEDFGDVVTFDTTYLTNKYDMPFAVFVGVNHHGQSTLLGCGLVSREDTESFVWLFKSWLRCMVGKAPVGIITDQCKAMQNAIELVFPTTRHRWCLWHIMKKIPEKLSRCSEYKKIKAAMKEAIYDTFTTNDFEEKWCSFIDKFELQQNNWLSGLYNERHRWVPTLLRKTFWAGMSTTQRSESIHAFFDGYINSTTTLRQFVKQYDNALRSRAEKEFQADFNSMDTTIPCGSTSSIENQFQCLYTHAKFKEIQAEFRSKMNCVTSLKIVEGCLATYQVLEDVLVGDRRKEIVKKVVFNRENHDLSCECSLFEFRGILCRHALCVFAHERIENVKEQYILSRWKKNIKRKHSYIKSSYSAVQLKPQIERFDKLCKHFYNVAEVAAESEVATKALHETLHDFDSNLPTMDDTTGNGKESFNEDSNPNTGTKIRSPVHVNRKGRPQKNRKISVLETVCKKPRKKTRTSYNGETATECNVGMISSQTESSIRVESSIEVVTGDSLMDSNTVICWVEVAEGSLYLLRDNLLVYGCLVTWWDAIQGHYVGRHVYVNGELMNYVG 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03489 802 MobiDBLite consensus disorder prediction 645 687 - -
Tsu02g03489 802 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 10 643 IPR031052 GO:0006355
Tsu02g03489 802 SMART 26again6 548 575 IPR006564 GO:0008270
Tsu02g03489 802 ProSiteProfiles Zinc finger SWIM-type profile. 537 573 IPR007527 GO:0008270
Tsu02g03489 802 Pfam MULE transposase domain 252 346 IPR018289 -
Tsu02g03489 802 Pfam FAR1 DNA-binding domain 46 131 IPR004330 -
Tsu02g03489 802 PANTHER OS03G0843700 PROTEIN 10 643 - -
Tsu02g03489 802 MobiDBLite consensus disorder prediction 647 676 - -
Tsu02g03489 802 Pfam SWIM zinc finger 548 570 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03489 Tsu-Chr2 39040530 39044808 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g03489 MULE 8.4e-35 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03489 - - gmx:102667848 793.112