Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03488 ATGAATAGTTTTGATAAGACGGTGGATTGTAATAGTAGTGGTCATGAATTTATTGAAATTGACAAGTTTCAAGATGATGGCGTATCTTGGGAGCCTGCAACAGATATGTGTTTTTCTTCCGCGGACGAGGTTAAATCTTTTTATGGAGAGTATGCTTTGAGAAAGGGGTTTGGGTGGAAGATTAGAACATCAAGAAAAGGGCAAGATGGAGAAATATGCTACTTGATTCTAGCATGCTCAAGAGAGGGGCATATAGTCTCAAATGTTCCATGTACATTGAAGACAAATCCGACAAAGGGGAAAAAATGTCCCGCTACGATGTGTATTAAGATGGAAAAAGATGGATTGTGGTACGTCACAAAATTTGATCCTAGCCATTCTCACGAGTGCAGCCCTACAAAGGCAAGGTTGTTCAAGGCTAACAAGGAAATTAACTTGCATGTGAAGAGGACTATTCAAATGAATGATGATGCAGGAGTGACGATCAACAAGACNTAG 498 0.3976 MNSFDKTVDCNSSGHEFIEIDKFQDDGVSWEPATDMCFSSADEVKSFYGEYALRKGFGWKIRTSRKGQDGEICYLILACSREGHIVSNVPCTLKTNPTKGKKCPATMCIKMEKDGLWYVTKFDPSHSHECSPTKARLFKANKEINLHVKRTIQMNDDAGVTINKX 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03488 165 Pfam FAR1 DNA-binding domain 46 131 IPR004330 -
Tsu02g03488 165 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 24 135 - -
Tsu02g03488 165 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 24 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03488 Tsu-Chr2 39039948 39040445 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu02g03488 FAR1 7e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03488 - - cam:101510307 231.491