Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03480 ATGCATTTCCCTTTCATTAATCTTCTAGCACAAGCAAGAACTTGGATCTCCTTTTTATTAATCTCTTTGGTTTTCATCAATGGCTACAAAGCTGAGGTTAGAAGTGGAGACACCAAAGTTATACCTATAGGTGCAATAATTGATGTTAATTCTAGAGTTGGTAAAGAACAAAGAGTAGCTATGGATATTGCTGCTCAAAATTacaataatatttcaaataccTTCAAACTTGCTCTCTTTTTTCAGGAACCAACCATGGATTCCTTCAAAGCTACTTCTCTTGCTGAAGAGATGATCAAAAAGCAGAAGGTGGAAGTGATTGTTGGAATGCATACATGGACAGAAGCAGCTTCAGTATCTGAATTAGTACATGAAGCTCAAGTTGATGTTCCTATTATATCCTTTGTAGCACCTGCAATTACTCCACCATTGATGGAGATTCGGTGGCCGTCTTTGGTGAGACTTGCTAACAATGGAACAGCATATGTAAAATGCATTGCTGATTTGGTTCATGTTTATAATTGGCATAGTGTAATAGCCATCTATGAAGATGATGCCTATGGTGGTGATTCTGGGATGCTAGCACTGTTATCCGAGGCTCTCCAAGATGTTGGTTCGATGATTGAATACCGTTTAGCTTTGCCGTCATTAGCATATCTGCCTGATCCGGGAGAGTTTATTCGTAAAGAGTTGTTTAAGATAACAGAAAACACACAATCTCGAGTATTCATTGTACTACAATCATCATTAGAAATGGGGATTCATTTGTTTAAGGAAGCTTCACAAATGGGACTAGTGGATAGAGATTCGGTTTGGATGATCCCCGAGAGCATAACTAATTTGTTAGATTCTGTCAATAAGTCAAGTATTTCTTATATGGAGGGAGCTTTAGGAATCAAAACCTACTACTCAGAAAACAGCAATGAGTATATAAAATTTGAGGCTCAGTTCAGAAAAGCTTTTCGCGACAAGAATCCCGAGGAAGATAACCGCGACCCGGGATTTTATGCTTTGCAAGCATATGATAGCATTCAAATAATTGGAAATGCAATAGACAGGATAGCTAGTGACAAAAAGACTTTACTACAAGAAATAGTGTCAAGCAACTTTCTTGGTTTAAgtggaaaaattaaatttgaatcaGAACAGCTTTTGCAGAATCCTACTTTGAGGATTGTAAATGTAGATGGGAAGAGTTACAGAGAATTAGACTATTGGACTCTTGAAAATGGATTCTTCACTAACATCTCCACAAAAGAAGGTGAAAATGGTGCTTCTAGAAACTCAGAAAGTTTAACTGGTGCAGTAATTTGGCCAGGAAAATTGCTTAGAGTTCCAAAGGGATGGAACCTACCTACTAAACAAAAACCATTGAGAATTGCAGTCCCTGGAAGAACTGCATTTTCCAAATTTGTCAAGGTTGATTATGATGCACATGGAAGTCCAAAATATAGAGGATTTTGCATTGATATTTTTGACAAGGTGTTGGAAGTTTTGGGGTATGATCTTCCTTATGAATATCATGCCATCAATGGAACATATCCTGATCTGGTTCAACTTGTTTATAACAAGACTTATGACGGTGTTGTTGGCGACATGACCGTACTGGCAGAGAGATTGGAATTTGTAGATTTTACTGTGCCATACGCGGAATCAGGATTGTCGATGATAGTTACAGAAAAGTCTCAAGAATCAGCATGGATGTTTATGAAGCCGTTCACCTGGCAAATGTGGGCGGTAACTGGCGCCATTTTGATTTATACAATGTTAGTAGTGTGGTACCTGGAGAAAGAAGACAATGAAGAGTTTCAAGGCAATTGGAAAAACCAAATCAGCACTTCTGTTTGGTTTACTTTCTCATCACTATTCTTTGCTCATAGAGAGAAAATGCATAGCAATTTATCTCGTGTAGTGATGGTATCGTGGCTGTTTCTAGTTTTGATTCTTAATTCAAGCTACACTGCAAGTCTTTCTTCGATGCTCACAGTTCAACAACTGCATGCAAATGTCACAGACATTGAGTGGCTGAAGAAGAACGACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACCTAGAGGAAGTCGAAAAATTCAAACCAGGGAACATCGTCAACATTAGTAATGAAAACAGTTATGACGCTGAATTCAAAAATTACTCAATTGCTGCAGCTTTTCTCGAACTCCCTTATGAAAAAGTATACATCAGTAAATACTGCAAGGGGTACTCTGCTTCTACACCTTCCACCAGATTTGGAGGACTTGGATTTATGTTCCAGAAAGGCTCCCCCTTGGCTAGAGATGTTTCTAAAGCTATTTTGGAGCTCTTACAAAAGGGAGAATTGAAGAAATTAGAAGATATATGGTTGAATCCCACAGATGTGTGCTCCAACAATTTGAATTCCAAGAGCACAGAAAGTTTGAAGCTAGGAAGTTTCTGGATTCTCTATGTGATTTCTGGTGCCACATCTACTATTTGTTTTCTAGTTTCTACTATCCATTCCCTAAAATCTAGTCAAACACCAAATGATGATGCACAAGAAAGTAATGGCTCCTCAAATGATGTGAGCAGATGGAAAAGGGTGGTTAAATTAACTAGAAATATTTGTAGCAGAAAGCATGATAAAACAAGCAAGGTAAAGGAAGATTTTACTGATTCTTCATCCAGTTGTGATTGCATCAGTACCCCTGAGCATCATCAGCAGGGAATGGATGTTCAATTACCAGAAATCATAACAGTCTCTTCACCACCAACACAGTTGTAA 2772 0.3766 MHFPFINLLAQARTWISFLLISLVFINGYKAEVRSGDTKVIPIGAIIDVNSRVGKEQRVAMDIAAQNYNNISNTFKLALFFQEPTMDSFKATSLAEEMIKKQKVEVIVGMHTWTEAASVSELVHEAQVDVPIISFVAPAITPPLMEIRWPSLVRLANNGTAYVKCIADLVHVYNWHSVIAIYEDDAYGGDSGMLALLSEALQDVGSMIEYRLALPSLAYLPDPGEFIRKELFKITENTQSRVFIVLQSSLEMGIHLFKEASQMGLVDRDSVWMIPESITNLLDSVNKSSISYMEGALGIKTYYSENSNEYIKFEAQFRKAFRDKNPEEDNRDPGFYALQAYDSIQIIGNAIDRIASDKKTLLQEIVSSNFLGLSGKIKFESEQLLQNPTLRIVNVDGKSYRELDYWTLENGFFTNISTKEGENGASRNSESLTGAVIWPGKLLRVPKGWNLPTKQKPLRIAVPGRTAFSKFVKVDYDAHGSPKYRGFCIDIFDKVLEVLGYDLPYEYHAINGTYPDLVQLVYNKTYDGVVGDMTVLAERLEFVDFTVPYAESGLSMIVTEKSQESAWMFMKPFTWQMWAVTGAILIYTMLVVWYLEKEDNEEFQGNWKNQISTSVWFTFSSLFFAHREKMHSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQQLHANVTDIEWLKKNDMKIGCDGDSFVRTYLEEVEKFKPGNIVNISNENSYDAEFKNYSIAAAFLELPYEKVYISKYCKGYSASTPSTRFGGLGFMFQKGSPLARDVSKAILELLQKGELKKLEDIWLNPTDVCSNNLNSKSTESLKLGSFWILYVISGATSTICFLVSTIHSLKSSQTPNDDAQESNGSSNDVSRWKRVVKLTRNICSRKHDKTSKVKEDFTDSSSSCDCISTPEHHQQGMDVQLPEIITVSSPPTQL 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03480 923 CDD GluR_Plant 456 792 - -
Tsu02g03480 923 Gene3D - 36 163 - -
Tsu02g03480 923 Pfam Receptor family ligand binding region 60 397 IPR001828 -
Tsu02g03480 923 Pfam Bacterial extracellular solute-binding proteins, family 3 481 793 IPR001638 -
Tsu02g03480 923 Gene3D - 337 457 - -
Tsu02g03480 923 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 904 - -
Tsu02g03480 923 SUPERFAMILY Periplasmic binding protein-like I 39 449 IPR028082 -
Tsu02g03480 923 CDD PBP1_GABAb_receptor_plant 43 416 IPR044440 -
Tsu02g03480 923 PIRSF IGluLR_plant 10 912 IPR017103 -
Tsu02g03480 923 Gene3D - 698 795 - -
Tsu02g03480 923 Pfam Ligand-gated ion channel 794 823 IPR001320 GO:0015276|GO:0016020
Tsu02g03480 923 Gene3D - 566 697 - -
Tsu02g03480 923 SUPERFAMILY Periplasmic binding protein-like II 433 793 - -
Tsu02g03480 923 Gene3D - 164 331 - -
Tsu02g03480 923 SMART GluR_14 457 794 IPR001320 GO:0015276|GO:0016020
Tsu02g03480 923 PANTHER GLUTAMATE RECEPTOR 3.4 22 904 - -
Tsu02g03480 923 Gene3D - 458 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03480 Tsu-Chr2 38989956 38993388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03480 17 851 Ion Channels AT2G29120 33.257 2.95e-138 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03480 - - aprc:113859865 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03480 02 38989956 38993388 Tsu02g03480 02 38989956 38993388 ECH