Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03465 ATGGAGTTCTCCAAGAAGCGCAAAACCGAAGAGAACGGCGACGCCAATTCTCCTCCTCCTTCAGCCGACGCCGCCGTAACCACCACCCCTCTCACCTCAGAAGACATTCGCAAAATTCTCCAACCCTTCGCTCAAGAGCAACTACTAAACCTTCTCCAATCCGCCTCCCTCCAACACCCAGACGTTCTCGACGCCGTACGTTCCGTCGCCGACCGGGATACCACTCGCCGTAAACTCTTCGTTCGTGGTCTCTCAGGTGAAACCACCACCGACACACTCCATTCAATTTTCTCTTCCTACGGTGAACTAGACGAAGCCATCGTGATTTTCGATAAGAACACTGGTAGGTCTAAGGGATACGGTTTCGTTGTGTTCAAACATGTTGACGGTGCTATTCTCGCTTTAAAAGAACCAAGCAAGAAAATCGATGGAAGAATGACGGTGACACAGCTTGCGGCGGCGGGTTCTGGTTCTACCGGCGGCGATGTTTCTGCTCGTAAGGTATTTGTAGGTAATGTTCCGTTTGAAGTTTCAGCTGAGAGTTTATTGAGTGAGTTTTCTAAGTATGGTGAAATTGAAGAGGGTCCATTAGGGTTTGATAAAGCTAGTGGAAAAACGAGAGGTTTTGCTTTCTTTGTTTACAAAACTGAAGAAGGTGCTAGGGCTTCACTTGTTGAGTCTACTAAAACAGTTGATGGTCATCAAGTGATTTGTAAGTTAGCTGTGGATAACAAAAAGCCCAAGCCCGGGGCACAAAACCCATCGGGCGGCTATCCGGTGGATAACTCTAATTCTAATTATCATGCTCCTAATCCTACGATGATGCCGCAGTATGGTGCTCCTCCTAATAATTATGGGCAGCAACCTTATAGTAATCAGGTTCCTGCTGCTGGTGGGTATGGACCTGGAATTGGTGGGGGTGCTCCTCAGTATGGTGGGCCTGTTGCTGGACCTGGGCCTGTTTCTGGTCAAAGAGCACCTCCTCCTTCTGTTGGTGGATATCCTGATGGTTCACAGTATGGTTACCCGACACAGCAGCCTTTGCCAATGCAGAGACCTCCTCCTGGTGGAATGTACCAAGGCGTGCCGCCACCTTATTATTGA 1104 0.4891 MEFSKKRKTEENGDANSPPPSADAAVTTTPLTSEDIRKILQPFAQEQLLNLLQSASLQHPDVLDAVRSVADRDTTRRKLFVRGLSGETTTDTLHSIFSSYGELDEAIVIFDKNTGRSKGYGFVVFKHVDGAILALKEPSKKIDGRMTVTQLAAAGSGSTGGDVSARKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARASLVESTKTVDGHQVICKLAVDNKKPKPGAQNPSGGYPVDNSNSNYHAPNPTMMPQYGAPPNNYGQQPYSNQVPAAGGYGPGIGGGAPQYGGPVAGPGPVSGQRAPPPSVGGYPDGSQYGYPTQQPLPMQRPPPGGMYQGVPPPYY 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03465 367 CDD RRM_RBM24_RBM38_like 77 152 - -
Tsu02g03465 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
Tsu02g03465 367 SUPERFAMILY RNA-binding domain, RBD 68 152 IPR035979 GO:0003676
Tsu02g03465 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Tsu02g03465 367 PANTHER GEO13361P1-RELATED 1 340 - -
Tsu02g03465 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Tsu02g03465 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Tsu02g03465 367 SUPERFAMILY RNA-binding domain, RBD 163 268 IPR035979 GO:0003676
Tsu02g03465 367 Gene3D - 38 161 IPR012677 -
Tsu02g03465 367 MobiDBLite consensus disorder prediction 243 367 - -
Tsu02g03465 367 SMART rrm1_1 167 239 IPR000504 GO:0003723
Tsu02g03465 367 SMART rrm1_1 78 150 IPR000504 GO:0003723
Tsu02g03465 367 MobiDBLite consensus disorder prediction 347 367 - -
Tsu02g03465 367 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 340 - -
Tsu02g03465 367 Gene3D - 162 268 IPR012677 -
Tsu02g03465 367 MobiDBLite consensus disorder prediction 256 294 - -
Tsu02g03465 367 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03465 Tsu-Chr2 38800266 38803585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03465 149 339 C2H2 Transcription Factor Family AT2G19380 26.906 9.83e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03465 K12741 - gmx:100804230 442.965