Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03463 ATGAGTTACACCTTTTATGACAAAATTTCTTCATCTGGGTATGATGATTTGGGCTTATTGAATCAATCTTTGCATAACTTTGGAGGTTCTAATGGTGTTTTAGAGAGTGGGAAGGGAAAGGTGGTGAAGTGCCCTGTAACTAAAAGGGTTGGTAAAGATGATATTTCTGAGGCTAAAGCTTTAGCTGCTTTGAAGAATCATAGTGAAGCAGAGAAGAGAAGGAGGGAGAGAATAAATGGTCATCTTGCAACACTGCGTGGTCTTGTGGCTTCCAATGATCAaaagATGGACAAAGCCACATTACTTGCTAAAGTGATTAGTCAAGTGAAGGAATTAAAGAAGAATGCAATGGAAGCAAGCAAAGGTTTTATCATTCCAATGGAAGATGATGAAGTGAAAGTTGAACCATATGATATTGAATTAGGATATGGATGCATGTCTTACAAAGCAACTATCTGCTGTGATTACCATCCTGAGATACTATCTGACCTCAAAAAAGCACTTGATGCACTTCAACTTCAACTAGTGAAAGTAGAAATGTCAACATTGGAAAATAGGATGAAGAATGTGTTTGTCTTTACATGTTGTAAAGGGGATAATAGTGTTAATGTTGAAACATGTCAAAGTATTGCAAATGTTGTTCATAAAGCATTAGATTCTGTGCTGGAAAAGGCTTACAGTTCAATGGAGTTTTCACTAATCAGAACTTCATATCCAAACAAGAAGAGAAGAATGTGCTTTGCTGAAACATCTACTTCCTCATGCAACCATGGATCTTGTTGCTCATGCTAA 792 0.3674 MSYTFYDKISSSGYDDLGLLNQSLHNFGGSNGVLESGKGKVVKCPVTKRVGKDDISEAKALAALKNHSEAEKRRRERINGHLATLRGLVASNDQKMDKATLLAKVISQVKELKKNAMEASKGFIIPMEDDEVKVEPYDIELGYGCMSYKATICCDYHPEILSDLKKALDALQLQLVKVEMSTLENRMKNVFVFTCCKGDNSVNVETCQSIANVVHKALDSVLEKAYSSMEFSLIRTSYPNKKRRMCFAETSTSSCNHGSCCSC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03463 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 114 IPR036638 GO:0046983
Tsu02g03463 263 PANTHER DNA BINDING PROTEIN-LIKE 25 255 - -
Tsu02g03463 263 PANTHER TRANSCRIPTION FACTOR BHLH30 25 255 IPR045847 GO:0003700|GO:0006355
Tsu02g03463 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 112 IPR011598 GO:0046983
Tsu02g03463 263 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
Tsu02g03463 263 CDD bHLH_AtAIG1_like 57 136 - -
Tsu02g03463 263 Gene3D - 58 121 IPR036638 GO:0046983
Tsu02g03463 263 Coils Coil 161 181 - -
Tsu02g03463 263 CDD ACT_UUR-ACR-like 151 218 - -
Tsu02g03463 263 SMART finulus 68 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03463 Tsu-Chr2 38781091 38784406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03463 59 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 40.940 3.22e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g03463 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03463 - - gmx:100804756 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03463 02 38781091 38784406 Tsu02g03463 02 38781091 38784406 ECH
Tsu08g03955 08 57851195 57853847 Tsu02g03463 02 38781091 38784406 ECH