LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g03461	ATGTGTAAAATCTTCTTCACCACActcttcctctttttcttctcatcaactgtttcttcttcttcttccttttacCACCACCAGCATCACCGCCGTATCCTCCACCAACCACTCTTTCCATCTATCTCTATTCCACCAACACAACCACCATCTTCATCACCACAAACTCAACCAAAACCACAAAAACAACAACCCAAACTTCCATTTTCTTCCATGTCTTCCTCTTCACCACCACAACCTCTTTCTCCACCTTTCTTTCCAACTTACCAACCACCACCACAACCTCCTTCACCATCTTTCCTCGCTACTTTCCCAGCTAACATCTCCTCCTTACTCCTTCCAACACCTCACACTAAAACCCATAACCACCGCTCCGCCGCCGCTCTTCTCATCACCCTCTCACTTTTCTCCATCCTCATCCTCACCCTATCAGCTTTCTTTGCCTACCACCGTCGTCATCATAACCACAAAACTTCCTCCACCACTGCAAACAACGACGATACTGCTTCAAGATCAGATAGTCTCCGTTTATTCCCGCCGAACACCGCCACTTCAGACGCCGTTGACATTAAACCATCATCTGGGTCGGAGATATTCAACATCGGAACCATATCAAGCTCAAATAACACAAGTGTTTCTGCAGAGTCAAGCTGTAATGGCAATGTCGGTTTCTCGCCGCCATACCGGCATCTTACAGACTCACCGGAGCTTCATCCATTACCTCCTTTACCACGTCAGAATGTCAGAACATGGAAGAATGAACCAAAGAAAGAAGAACACATAgcaagagaagatgaagaacagtTTTATTCACCAAAAGTTTCTCCTTCTCCTTCACCAGTTGTTGCTGCTGCAAAAAGCTCTCATTTTGATAAATTTGGTAGCAAAAGCTTAACTTCAAGAACAGCTTCATACCCTCTTTCACGTTCTCCTTCTCTCAATCTTAGTCCTATTGAAAGTATCAATTCGTTTCCACCTCAGAACTCTGCATCTCcatgtttttcttcttcatcttcacctATGCAGAGGGAAGATTTGGATGGTAAGAATGTTGAAGTGAGCAAACTTCCTCCTCCTGCTCCGCCGCCTTTGCCGCCTAGGTTTTGGGAGACTCCTGTGGTGGCTTCTCAAGATGTTAATGTTGAGAATGAGGAAAGTTCAAAGCCAAAGTTAAAGGCTTTACATTGGGATAAAGTTAAGGCCAGCTCAGATAGGGCCATGGTTTGGGATCACTTGAGACCAAGTTCATTTCAGTTGAATGAAGATATGATTGAGTCACTCTTTATGGTAAATAATTCCAATTCCAATGGAAATTCTGCTTTGGCTCCTAAAGATAATGCTCGGAGCCAAATAATCCATGCTGCTCCCATGCCACCAGAAAATAGGGTGCTTGATCCTAAGAAGTCTCAGAACATTGCCATTTTGCTTCGAGCACTGAATGTAACTATTGATGAAGTTTGTGAAGCTCTCCGGGAAGGCAATTGTGATACACTGGGAACAGAACTTCTAGAAAGTTTATTAAAGATGGCTCCAACTAAAGAGGAAGAATCTAAGCTGAAGGAGTTTAAAGACGAGTCACCCTTCAAGCTAGGCCCGGCTGAGAAATTTCTGAAAGTCATGCTTGATATACCTTTTGCATTCAAAAGAATGGATGCTATGCTCTACATTGCTAATTTTGATTCAGAATTAGAATACCTGAAAAAGTCCTTTGATACTCTGGAGGTGGCTTGTGAGGAATTAAAGAATAGCAGAATGTTTATGAAGATACTAGAGGCTGTTCTTAGAACGGGGAATCGAATGAATGTCGGTACCGACCGTGGTGACGCACAGGCATTCAAACTGGACACGCTTTTGAAGTTAGTTGATATTAAGGGAACTGACAGAAAGACTACTCTTTTACATTTCGTTGTACAAGAAATTGTCAGAACCGAGGGTTCTCTTGTATCTGGTGCGGACCATCAAAATGTTGACTCCTTCAATAACCATCAGTGTACACTTCAAGATGAGGTTGACTCGAGGAAGCTTGGACTGCAAGTTGTATCAGGTTTGAGTGGAGAACTCACCAATGTTAAAAAGGTAGCTGTTATGGATTCAGACACGCTGAGTAGCGAAGTTGCTAAACTTGCCAAAGGAATTGAAAAGGTTGTGCTAGTTGTAAAATTGAATGAAGAGTCACCTTTGAAAGAAACCAACCAAAAATTTTCTGAGGCAATGAAAAGTTTCTTAGAGAGGGCTCAGGAAGAGATTTTAAGAATCCAGGTGCAAGAGAAAAGTGCCATCTCTTCAGTGAAGGAGGTAACTGAGTATTTCCATGGTAATTCGGCAAAGGAAGAAGCTCATCCGTTTAGGATATTTATGGTTGTGAGGGATTTCCTTTCGATACTAGATGGCGTATGCAAGCAAGTTGGGAAAGCAAATGAGAGGACTTTAGTTGGTTCGCGGCTAGATGTAATGCCTTCAATCACTTCACTGCCACCAATTTTCCCTGAGTTTAATGGTAAGCAACCATCTGGTGATTCCTCAGAATCTGATTAG	2535	0.4118	MCKIFFTTLFLFFFSSTVSSSSSFYHHQHHRRILHQPLFPSISIPPTQPPSSSPQTQPKPQKQQPKLPFSSMSSSSPPQPLSPPFFPTYQPPPQPPSPSFLATFPANISSLLLPTPHTKTHNHRSAAALLITLSLFSILILTLSAFFAYHRRHHNHKTSSTTANNDDTASRSDSLRLFPPNTATSDAVDIKPSSGSEIFNIGTISSSNNTSVSAESSCNGNVGFSPPYRHLTDSPELHPLPPLPRQNVRTWKNEPKKEEHIAREDEEQFYSPKVSPSPSPVVAAAKSSHFDKFGSKSLTSRTASYPLSRSPSLNLSPIESINSFPPQNSASPCFSSSSSPMQREDLDGKNVEVSKLPPPAPPPLPPRFWETPVVASQDVNVENEESSKPKLKALHWDKVKASSDRAMVWDHLRPSSFQLNEDMIESLFMVNNSNSNGNSALAPKDNARSQIIHAAPMPPENRVLDPKKSQNIAILLRALNVTIDEVCEALREGNCDTLGTELLESLLKMAPTKEEESKLKEFKDESPFKLGPAEKFLKVMLDIPFAFKRMDAMLYIANFDSELEYLKKSFDTLEVACEELKNSRMFMKILEAVLRTGNRMNVGTDRGDAQAFKLDTLLKLVDIKGTDRKTTLLHFVVQEIVRTEGSLVSGADHQNVDSFNNHQCTLQDEVDSRKLGLQVVSGLSGELTNVKKVAVMDSDTLSSEVAKLAKGIEKVVLVVKLNEESPLKETNQKFSEAMKSFLERAQEEILRIQVQEKSAISSVKEVTEYFHGNSAKEEAHPFRIFMVVRDFLSILDGVCKQVGKANERTLVGSRLDVMPSITSLPPIFPEFNGKQPSGDSSESD	844

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g03461	844	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	381	821	IPR015425	-
	Tsu02g03461	844	PANTHER	FORMIN-RELATED	13	843	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	57	76	-	-
	Tsu02g03461	844	SMART	it6_source	381	810	IPR015425	-
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	44	100	-	-
	Tsu02g03461	844	PANTHER	FORMIN-LIKE PROTEIN 2	13	843	-	-
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	318	344	-	-
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	225	282	-	-
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	155	191	-	-
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	161	191	-	-
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	77	100	-	-
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	250	270	-	-
	Tsu02g03461	844	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	357	808	-	-
	Tsu02g03461	844	Pfam	Formin Homology 2 Domain	383	795	IPR015425	-
	Tsu02g03461	844	MobiDBLite	consensus disorder prediction	318	367	-	-
	Tsu02g03461	844	Gene3D	Formin, FH2 domain	389	812	IPR042201	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g03461	Tsu-Chr2	38762345	38765993	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g03461	384	813	FH2 protein (formin) Gene Family	AT3G25500	67.436	0.0	585

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g03461	-		-	gmx:100786203	922.154