Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03458 ATGGCTATGCAATCaccttcctcttcctcttcatttTCCTATGGTTTCACTTACCAAGTCTTTCTCAGTTTTAGGGGCACAGACACTCGCCACGGTTTTACTGGCAATCTCTACAAGGCTCTTATTGACAAGGGAATCCACACTTTCATTGATGACAATGATCTTCAAAGAGGAGATGAAATCACACCATCACTCGTCAAGGCAATTGAGGAATCTAGGATTTTTATTCCTGTGTTTTCTATCAACTATGCCTCTTCTTCATTTTGTTTGGACGAACTTGTCCACATCATTCACTGCTACAAGACAAAGGGTCGCCTCGTTTTGCCAGTTTTCTATGGCGTGGATCCTACTCACGTACGTAATCAGAATGGGAGTTATGGTGAACATCTCACTAAGCACGAAGAGAGGTtccaaaataacaaagaaaacaTGGAGCGATTGCATCAATGGAAAATGGCTCTTAACCAAGCTGCTAATTTGTCCGGCCACCATTTTAGTTCTGGATATGAATACAAGTTTATCAAAGAGATAGTCAAATACATCTCCAACAAGATCAATCGTGTTTCTTTACATGTTGCCGATTACCCTGTTGGATTACATTCTCGAGTACAACAAGTGAAATCACTTCTTGACAAGGGCTCTAATGATGGGGTCCATATGGTAGGAATTTATGGTGCAGGAGGCTTGGGTAAATCAACACTTGCAAGAgcaatttacaattttgttgGCGATCAATTTGAAGATATATGTTTTATTCATAATGTGAGAGAGAGTTCAAGTCAAAATAACTTGAAACATCTCCAGGAGGAGCTCCTTTTAAAAACGGTTGGATTGGACTTTAAGTTAGGAGATGTTAGTGAGGGAATTCCAATCATAAAGGAAAGACTACATATGAAGAAGATTCTTTTGATTCTCGATGACATTGACAAACTGAAGCAATTGCAGGCATTGGCTGGAGGATTTGATTGGTTCGGTGATGGCAGCAGAGTCATCATTACCACTCGAGACAAACACTTACTAACCAGTCACGAGATAAAAGACACGTATGCAGTAGAAGGGTTATATGGGACAGAAGCTCTTGAATTGTTGAGATGGATGgcttttaaaaataacaaagttCCTTCAAATTATGAAGAGATTTTAAACCGTACAGTTACTTATGCTTCCGGCCTTCCATTAGCTATAGAAATAGTAGGTTCCAATTTGTTTCAAAAGAGCATAGAAGAATGGAAGTATACATTAGATGGCTATGAAAAGATTCCCAATAAAGAGATCCAAAAGATACTTAAAGTAAGCTTTGATACTTTGGAGGAAGAGGAGCAAAGTGTCTTTCTGGATATTGCTTGTTGCTTCAATGGATGTAGAATGACCGAAGTTGAAGAGATACTTCGTGCTCATTACGGAGGCTCCATGACACATAGAATTCAAGTGTTGTCTGAAAAATCTCTCATTAAGATTGGCCATTTTGAGCAGAGTTGTATTTGTAGTGTGACAGTACATGACTTGATAAAGGACATGGGTAAAGAAATTGTCCGACAAGAATCACCAAAAGCGCCTGAAAAGCGCAGTAGGTTGTGGCTCCGAGAAGATATACTTCAAGTTTTAGAAAAGAATACGGAAAACAGTGATATTGAAATCATATCTCTGAATTGCGGCTCAACTGAAGCAACAATGGATTGGAATGGAAAGGCTTTCGAGAAGATGAAAAGTCTCGTGACACTTATCATTAAAAGTGATAATTTTTCTGAAGGCTCCATACACTTTCCATGTAACTTGAGAGTATTAAAATGGCAAAAATATCATTCACAGTGTATACCATATAGCTTTTTCAACAAGAAGTTCGAGAATataaaagttttgaaatttgacAATTGGGGATGTGGAATGTTGAGGTTACCAAGTTTCATTTTCAAGATGCCAAAATTTTCAACTATTTGGGTTCAAAAGTCTTATCATTACTACTTATTGCCAAGGCCGATTTCCAAGGTGTCTTCAGATGTGAAATGGGTTTATCTCTATGAAAGCAACCTCTCAGATGAATGTCTTCCAAAAGTTGTCACATGGTTTACTAATGAGGAAGAATTAAACCTAGTTGGAAGCAATTTTGAAATTCTTCCGGAATGCCTCAAAGAACGTCTCCATCTACGGGGACTGGAATTGTTTAATTGCATGTCTCTTAAGAAAATAAGAGGGGTTCGGCTAAATCTTGTTATTTTGTCTGCATCAAACTGCAAATCATTGAATTTCTCAAGTAGAAGCATGCTAATAAATCAGGAACTAGTAACTACTGATGAGGGTAGAAAGACCGATTTTGGTTTTCCAGCAGGAGGAAGTGAAAGGATTCCGGAGTGGTTTGAGCACCAAAGCATCGGACCAACAAGAATCTCTTTCTGGTTTCGTAACAAGATCCCTTCCATAGCTCTCTTCTTTTCTACTAAATGGGCGTGTAACCACGAAGAAAAACTTCAGTTAAGAGTAAATTTGTTCATCAATGGCGATAAATATACTTTTTCTCTCaaggaatttatttttgaatcctTGTTAGAAACGAATCATATATACCTAATTTATCTTGATTTGGATGGACTAGTTCACCGCTCGGATATCTATGAGAAACTTGAATCTAAATTGGAggaatcatttttaaaaaaagaatggaTCCATATGGAGTTGAAGTTGGAGAGCTATTGGAAATCAGAAGATGATTCTGATGAGATGATGAAATTACTCCGCGCAAAATTTGGAATCCATGTGTTCAAGGAAGAGAACAACTTGGAAGATGTCGAATTCACCAATCCttatagaaagagaaaatcataTGAACATGATTCCACCAACAGGGGTTATTATGTTCGCAATGTTTATCAGCTATTAACCACTCAGGAGGATGTCACTTTGAATGTAGCAGGAGACTTAATATGGCACAAAAAGTTTCCCTTGAAGGTTTATATATTTGCTTGGAGACTCTTTCGACACAGGTTGCCAACAAAAGCAAATTCGGTGACTCACGACATTATTCCTCCAGACGCTTACTATATTGTGTGTCCGGTTGCGGAGGTGTGGAATCAGCTCATCACTTATTTCTTGCATGTAGTACCTTTGGTGCTATATGGACGTCAGTTCGGTCTTGGAGTTAGAGGAGATAGTACAGATCTGTTTGACCAAAATCTttcacaacacaacacaaatcAGCTTGaagagaaacaacaacaacaacaatggaaGGAGGAGGAGGAGCTCCGCCTACCGACACCGTGA 3258 0.3656 MAMQSPSSSSSFSYGFTYQVFLSFRGTDTRHGFTGNLYKALIDKGIHTFIDDNDLQRGDEITPSLVKAIEESRIFIPVFSINYASSSFCLDELVHIIHCYKTKGRLVLPVFYGVDPTHVRNQNGSYGEHLTKHEERFQNNKENMERLHQWKMALNQAANLSGHHFSSGYEYKFIKEIVKYISNKINRVSLHVADYPVGLHSRVQQVKSLLDKGSNDGVHMVGIYGAGGLGKSTLARAIYNFVGDQFEDICFIHNVRESSSQNNLKHLQEELLLKTVGLDFKLGDVSEGIPIIKERLHMKKILLILDDIDKLKQLQALAGGFDWFGDGSRVIITTRDKHLLTSHEIKDTYAVEGLYGTEALELLRWMAFKNNKVPSNYEEILNRTVTYASGLPLAIEIVGSNLFQKSIEEWKYTLDGYEKIPNKEIQKILKVSFDTLEEEEQSVFLDIACCFNGCRMTEVEEILRAHYGGSMTHRIQVLSEKSLIKIGHFEQSCICSVTVHDLIKDMGKEIVRQESPKAPEKRSRLWLREDILQVLEKNTENSDIEIISLNCGSTEATMDWNGKAFEKMKSLVTLIIKSDNFSEGSIHFPCNLRVLKWQKYHSQCIPYSFFNKKFENIKVLKFDNWGCGMLRLPSFIFKMPKFSTIWVQKSYHYYLLPRPISKVSSDVKWVYLYESNLSDECLPKVVTWFTNEEELNLVGSNFEILPECLKERLHLRGLELFNCMSLKKIRGVRLNLVILSASNCKSLNFSSRSMLINQELVTTDEGRKTDFGFPAGGSERIPEWFEHQSIGPTRISFWFRNKIPSIALFFSTKWACNHEEKLQLRVNLFINGDKYTFSLKEFIFESLLETNHIYLIYLDLDGLVHRSDIYEKLESKLEESFLKKEWIHMELKLESYWKSEDDSDEMMKLLRAKFGIHVFKEENNLEDVEFTNPYRKRKSYEHDSTNRGYYVRNVYQLLTTQEDVTLNVAGDLIWHKKFPLKVYIFAWRLFRHRLPTKANSVTHDIIPPDAYYIVCPVAEVWNQLITYFLHVVPLVLYGRQFGLGVRGDSTDLFDQNLSQHNTNQLEEKQQQQQWKEEEELRLPTP 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03458 1085 Gene3D - 15 183 IPR035897 -
Tsu02g03458 1085 Pfam zinc-binding in reverse transcriptase 949 1006 IPR026960 -
Tsu02g03458 1085 PANTHER ARCHAEAL ATPASE 28 893 - -
Tsu02g03458 1085 SMART till_3 17 160 IPR000157 GO:0007165
Tsu02g03458 1085 MobiDBLite consensus disorder prediction 1066 1085 - -
Tsu02g03458 1085 Pfam NB-ARC domain 202 433 IPR002182 GO:0043531
Tsu02g03458 1085 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Tsu02g03458 1085 SUPERFAMILY "Winged helix" DNA-binding domain 423 536 IPR036390 -
Tsu02g03458 1085 SUPERFAMILY L domain-like 499 752 - -
Tsu02g03458 1085 Gene3D - 184 348 IPR027417 -
Tsu02g03458 1085 SMART AAA_5 217 356 IPR003593 -
Tsu02g03458 1085 Gene3D Ribonuclease Inhibitor 529 764 IPR032675 -
Tsu02g03458 1085 CDD AAA 197 334 - -
Tsu02g03458 1085 Gene3D - 354 437 IPR042197 -
Tsu02g03458 1085 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 162 IPR035897 -
Tsu02g03458 1085 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 893 IPR044974 GO:0006952
Tsu02g03458 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 447 IPR027417 -
Tsu02g03458 1085 Pfam TIR domain 18 187 IPR000157 GO:0007165
Tsu02g03458 1085 MobiDBLite consensus disorder prediction 1070 1085 - -
Tsu02g03458 1085 PRINTS Disease resistance protein signature 388 402 - -
Tsu02g03458 1085 PRINTS Disease resistance protein signature 220 235 - -
Tsu02g03458 1085 PRINTS Disease resistance protein signature 295 309 - -
Tsu02g03458 1085 PRINTS Disease resistance protein signature 731 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03458 Tsu-Chr2 38722962 38733224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03458 197 609 WRKY Transcription Factor Family AT5G45050 30.594 5.74e-50 191