Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03445 ATGTCCGTTTTCGTTTTAACCGCTATGGATTTGGCCGTCCTCGGTTTTCTCGTTCCTTCTTTATGGGAGATCGAAGTCGCTTTCGCTGCTTCTGTATTCGTTATTCTTGCTTATTGGTTTTTCACTTTCAGAACCGGTGATCATTACTCCGATCGATCGCTTTCTGATAATTCTTCCGCCGTTAATGTCCCCGAGATTGGCCCGTCGAGAGGATATTCTCAAAGTTCGGCCTACCTGATTAAGTTAGAACTATTGGCTGCTAAAAATCTGATTGCTGCAAACTTAAATGGCACATCGGATCCTTATGCCATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGATCCCTGGTTCAAGAAATCCAATGTGGGGCGAAGAGTTCAATTTTTCTGTCGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGATAGTCCATCAGGGCAGGTTTGTCTTAATACTAAAACACAAAAACTATCTGCAAATTCTGCCAGGGTAAATGGTTATGGCGGGGCCAACACTCGAAGAAGGATACCCTCTGAAAAAGAGGGACCCACAGTTGTCCATCAAAAGCCAGGACCTCTTCAAACGATATTTGATCTTCATCCAGATGAGGTTGTTGATCATAGTTACTCTTGTGCACTTGAGAGGTCATTTTTGTATCATGGTCGTATGTATGTCTCAACATGGCACATTTGTTTCCATTCCAATGTGTTCTCAAAACAAATGAAGGTGGTTATTCCATTTGAAGATATAGATGAGATTCGAAGGAGCCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGTATGGGTGCTGGTGGACATGGCGTCCCTCCTTTGGGAAGTCCTGATGGTAGAGTCAGATATAAGTTTGCATCATTTTGGAACAGGAATCACGCACTTAGAAATCTACAACGTGCAGAAAAGAACTTACGTAAAATGTtggaaaaagagaagaagGAAAATGCAGAGTCAGAATTGCGTGCACATAGCAGTTCTGTCAGACGAAGTAACATAATGGATAAGGTTCCCGAAACCAGCATGCCAAAAGTTGGAAAACTTCAAACTTTTACCAAAGAAGAGGCTTTAGTTGGTATATACAATGATGATTTCCCCTGCACAGCTGAgcaattttttaacttattgTTAAAGGATGATTCAAAATTTACTAGCAAGTATCGTTCAGTACGAAAGGATACTAATCTTGTGatgGGACAGTGGCATACAGCAGAAGAATATGACGGTCAAGTCCGAGAGATAACCTTCAGATCTCTTTGCAACAGCCCTATGTGCCCGCCAGACACAGCCATGACTGAATGGCAACATGTTGTTCTATCATCAGACAAGAAAAACCTGGTGTTTGAGACTGTGCAGCAGGCACACGATGTTCCATTTGGGTCCTATTTTGAGGTGCACTGTAAATGGAGTTTGGAGACAACCAGTGAAAGTTCATGTACTCTGGACATTAGAGTGGGTGCACATTTCAAGAAATGGTGTGTGATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGATGTGATGTTAGATGTTGCTCGTTCATATATAAAGTCGCATACTTCTGATGACGAGAATGATAAGGCCTCTTCGTCCCCTGCGGCAACTTCAGAaagttaa 1761 0.4089 MSVFVLTAMDLAVLGFLVPSLWEIEVAFAASVFVILAYWFFTFRTGDHYSDRSLSDNSSAVNVPEIGPSRGYSQSSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGNEKRFSSMIPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLNTKTQKLSANSARVNGYGGANTRRRIPSEKEGPTVVHQKPGPLQTIFDLHPDEVVDHSYSCALERSFLYHGRMYVSTWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRNLQRAEKNLRKMLEKEKKENAESELRAHSSSVRRSNIMDKVPETSMPKVGKLQTFTKEEALVGIYNDDFPCTAEQFFNLLLKDDSKFTSKYRSVRKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAMTEWQHVVLSSDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETTSESSCTLDIRVGAHFKKWCVMQSKIKSGAVNEYKKEVDVMLDVARSYIKSHTSDDENDKASSSPAATSES 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03445 586 Pfam VAD1 Analog of StAR-related lipid transfer domain 402 547 IPR031968 -
Tsu02g03445 586 Gene3D C2 domain 64 193 IPR035892 -
Tsu02g03445 586 ProSiteProfiles C2 domain profile. 62 176 IPR000008 -
Tsu02g03445 586 Coils Coil 333 364 - -
Tsu02g03445 586 PRINTS C2 domain signature 95 107 IPR000008 -
Tsu02g03445 586 PRINTS C2 domain signature 140 148 IPR000008 -
Tsu02g03445 586 PRINTS C2 domain signature 119 132 IPR000008 -
Tsu02g03445 586 ProSiteProfiles VASt domain profile. 398 568 IPR031968 -
Tsu02g03445 586 SMART C2_3c 79 175 IPR000008 -
Tsu02g03445 586 CDD C2 80 176 - -
Tsu02g03445 586 Pfam C2 domain 81 175 IPR000008 -
Tsu02g03445 586 Pfam GRAM domain 229 297 IPR004182 -
Tsu02g03445 586 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 11 583 IPR044655 -
Tsu02g03445 586 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 78 185 IPR035892 -
Tsu02g03445 586 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 11 583 - -
Tsu02g03445 586 SMART gram2001c 226 292 IPR004182 -
Tsu02g03445 586 MobiDBLite consensus disorder prediction 567 586 - -
Tsu02g03445 586 Gene3D - 227 345 IPR011993 -
Tsu02g03445 586 MobiDBLite consensus disorder prediction 198 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03445 Tsu-Chr2 38562097 38572779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03445 79 164 C2H2 Transcription Factor Family AT4G21160 24.419 2.66e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03445 - - gmx:100813208 982.63