Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03444 ATGATAGCTAGCTCCTTCAACAATGCTGATTCTATGTTTTCTAATGAAGAAGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGCCTTTGTTCTGTTGATCAAAGCAATTATAATTCTATTGCTTCTAAAAAGCAAAAGACTGACTTATCGATCAGCACTAAGGATAGGAAGGAAAAGATTGGCGAACGGATTGTTGCTCTTCAACAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCGATGGACTACATAGAGTTCCTTCATAAACAAGTTAAGCTGCTTAGTGCTCCTTACCTCGAAGCTTCACCAGCCACCCAGATGCAGGGTACAGAGTCATTCAGCAGCCTGAGGAGTAGAGGGTTATGTCTTGTTCCTGTCTCATTTACTATTGGAGTTGCTGAGGGCAATGGTGCAGACATATGGGCACCAATCAAGACCACTTCACCTAAACATGAGAAAGATGTCTCGCAATCGTAA 501 0.4152 MIASSFNNADSMFSNEEGIDVRKMMGHKRSLCSVDQSNYNSIASKKQKTDLSISTKDRKEKIGERIVALQQLVSPYGKTDTSSVLKEAMDYIEFLHKQVKLLSAPYLEASPATQMQGTESFSSLRSRGLCLVPVSFTIGVAEGNGADIWAPIKTTSPKHEKDVSQS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03444 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 112 IPR036638 GO:0046983
Tsu02g03444 166 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Tsu02g03444 166 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 147 - -
Tsu02g03444 166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Tsu02g03444 166 Gene3D - 43 116 IPR036638 GO:0046983
Tsu02g03444 166 PANTHER TRANSCRIPTION FACTOR BHLH154 24 147 - -
Tsu02g03444 166 SMART finulus 52 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03444 Tsu-Chr2 38550112 38554823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03444 24 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 56.643 4.30e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03444 - - gmx:100809747 269.626