Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03435 ATGGCTTGTGTTCTTGAAACAAAGAACGATCGGGTATCATGGCAGTCTCCAGAACTTCAAGAACTATTTTTAAGAGTTGTCAATCAACTTGGCATTGATAAGGCTAcgccaaaaaaaattactgaaTTGATGGATGTTCCGGGTTTGGAAAAGAAGCATGTTGCTAGCCATTTGCAGAGATTCAGACTTGGTTTGAAGAGTTCAAAGACAAAGTCAAAAAGTGGAAGGGAAAATTCAAAGCAGGATCAATATCATCTTCCTGATGAAAGCCTTGAAGTTGTTGAGTCAATGCCAGAACAAGATCAATATCATGTTCCTAATGAAAGTCCTGAAGTTGTTGAGTCAATGCCAGAACAAGATCAATATCATGTTCCTAATGAAAGCCTTGAAGTTGTTGAGTCAATGCCAGAACAAGATCAATATCATGTTCCTAATGAAAGCCTTGAAGTTGTTGAGTCAATGCCAGAACAAGATCAATATCATGTTCCTAATGAAAGCCCTGAAGTTGTTGAGTCAATGCCAGAACAGGATCAATATCATGTTCCTAACTTAGGAATGGAGCAACAAGTCTATACAAACATAAATGACAAGTTCGAGGAAACTGATTTTGTCTATCCAAGAGGGGATCCGGATGCTGTTTGCCTAAAGCTCTTCCTGGCTGAATCTCCATTTAATTTCAATCCGTTCAGAATAACCAAGTCCTCCAACTTTCTCAATTCAGACTGGTTTCCACCTGCAGAGGCTTATCTCAAGCGAACATTTATACGTAGGTTAATATTTGAACTGGTGGAAAACCATGGTTCACGTGAAGGCTTTTCCCCGGAAAATGGTGATGACTGCCTCTGCTCAGAATATAATGACAACAGGATTGGAGGTCAGTGTCATTTAATCAATGGAGAGGCATCTGGCCAAGGAATAGAACTGGCTCAACATTTGAATACTTCTAGTATGGTTCTTAAGGAGCATTTGAAACCAGGAGCTACATTTGGAACTTCACTGAGAGATTGCCAATCTTTTGACAACATGATTGGTGGTCAGTTTCATTTAATCAACAGAGACACATCTGGCCGAGGAATTGAACTGGCTCAACCTTTGAATACTTCTTCTAGTATGGTTCTTAAGGAGCATCTTGAACCAGGAGCTACATTGGGATCTTCACTGAGACATTGCCAATCTTTTGACCAGCGATCATCTAATCACTGTTTCAATGGTTCATATCCGATGTCCATAGAAAACATTCGGCATTTACTAGATAATTATGCTGCTACTATCAATTTTCCATTTAACAAATCAAGATCATCGCTTGAAGATGGACATCGAGAGAACCATCGTAGACAGATAGAAAATCTTGAACATTTTCTAGATATGGATGATCATGCTCCTATTAGCAATTTGGCTGTTGATCCcctcatttatttttctcaagaCTGGAATATGATGTGTGCTGGCAACAAGATTTGGTCACCAACTCTACAATTACATCAAGTTTCTAATGCAGTAGATAACGAGGTCTTCTATGATGATGTTCAGATCATTGATAACatgaaattggatttttgggaAGAGCAGCCTGCAAAGAAGAGGCGGCTTATGCATTTTCCGGGTGAAAGTGATGGAATCCATACTTCTTTTAccttaatatga 1644 0.3777 MACVLETKNDRVSWQSPELQELFLRVVNQLGIDKATPKKITELMDVPGLEKKHVASHLQRFRLGLKSSKTKSKSGRENSKQDQYHLPDESLEVVESMPEQDQYHVPNESPEVVESMPEQDQYHVPNESLEVVESMPEQDQYHVPNESLEVVESMPEQDQYHVPNESPEVVESMPEQDQYHVPNLGMEQQVYTNINDKFEETDFVYPRGDPDAVCLKLFLAESPFNFNPFRITKSSNFLNSDWFPPAEAYLKRTFIRRLIFELVENHGSREGFSPENGDDCLCSEYNDNRIGGQCHLINGEASGQGIELAQHLNTSSMVLKEHLKPGATFGTSLRDCQSFDNMIGGQFHLINRDTSGRGIELAQPLNTSSSMVLKEHLEPGATLGSSLRHCQSFDQRSSNHCFNGSYPMSIENIRHLLDNYAATINFPFNKSRSSLEDGHRENHRRQIENLEHFLDMDDHAPISNLAVDPLIYFSQDWNMMCAGNKIWSPTLQLHQVSNAVDNEVFYDDVQIIDNMKLDFWEEQPAKKRRLMHFPGESDGIHTSFTLI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03435 547 Gene3D - 6 67 - -
Tsu02g03435 547 PANTHER ULP1 PROTEASE FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 340 421 - -
Tsu02g03435 547 PANTHER ULP1 PROTEASE FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 450 532 - -
Tsu02g03435 547 PANTHER ULP1 PROTEASE FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 214 352 - -
Tsu02g03435 547 MobiDBLite consensus disorder prediction 65 120 - -
Tsu02g03435 547 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 340 421 - -
Tsu02g03435 547 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 214 352 - -
Tsu02g03435 547 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 450 532 - -
Tsu02g03435 547 SUPERFAMILY Homeodomain-like 8 67 IPR009057 -
Tsu02g03435 547 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 9 63 IPR006447 GO:0003677
Tsu02g03435 547 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03435 Tsu-Chr2 38459047 38461825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03435 7 129 Response Regulator Gene Family AT2G01760 36.364 7.81e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu02g03435 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03435 K08596 - mtr:MTR_5g066530 237.654