Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03433 ATGACTTCTCAAGTGCCTCATGCTTATGTTGTTTATCACCACCTTATTCTCAATCAACATAACATCACTTCACTTTTCACACAAACAAGAGACATTGAACCTCCCACACGACGATATCAACCTACCGTGTCGGCTGTTCAAGATGGTCATGTGATTCTTCAGGAGGTGAACCAACAAGTTTCGACAACAAGAGGCGCTACTAGAAGACGGTATAACACTGATGTTTCGTCGGCTTATTATATCCAAGATGGTGTTTTTATTCTTGATGAAAGCATCAGTCAAGTGAACCAACAAGTTCCGACAAGAAGAGACAATGGAGGACGGTTTGATGCCAAGCTTGAGAGGATTATTATTCAACAAGTACCGACAGATTCTGAAGCTATGACATGTTCCATATGTCTTGTGGACTTTTCAGTTGGGTTAGAAGTTTTCCGATTGCCGAGTCCTTGTTTGCATATCTATCACAAAGATTGCATTCTCGAGTGGTTGGATAGATCTAGCACATGCCCTATGTGCCGTAGGCCTGAAACTTCTTCTGCTCAGTACATACTGCTGCAGTACATTGCTGCATCGGGTGGTTTGAAGCTTCAAAATTCCATTAGCAATGCTTATGCAATGGGAAAACTGAGGATGATAGCCTCCAAGTTCGAGACTGCTAAGAAAGTCACGTGCAACCGGAATTCCTTCAAAGCTGCAGAGATTGGTGGTCAGTTTCATTTAATCAACGGAGAGGCATCTGGCCGAGTTATAGAACTGTCTCAATCTTTGAATACTTCTAGTATGGTTCTTAAGGAGCATTTTGAACCAGGAGCTACATTGGAAACTTCCCTGAGACATTGCCAATCTTTTGACCAGCAATCATCTATTAGCATTTTGCCTCTTGATcacttcatttatttttctcgaCACTCAGATATGATGTGTGCTGGCAACAGGATTTGGTCACCAACTCCACAATTGCATCAAGTTTCTAATGCAGTAGATGACGAGGTCTTCAATGATCAAGTTTCTCAACACTCGAAACTGGATTTTTGGGAGGAGCTACCTACAAAGAAGAGGAGGCTTATGCATTTTCCGGGTGGAAGTGATGGAATCCTGACTTCTTTTTTACCTTCATGTGATTTTGAATAA 1131 0.412 MTSQVPHAYVVYHHLILNQHNITSLFTQTRDIEPPTRRYQPTVSAVQDGHVILQEVNQQVSTTRGATRRRYNTDVSSAYYIQDGVFILDESISQVNQQVPTRRDNGGRFDAKLERIIIQQVPTDSEAMTCSICLVDFSVGLEVFRLPSPCLHIYHKDCILEWLDRSSTCPMCRRPETSSAQYILLQYIAASGGLKLQNSISNAYAMGKLRMIASKFETAKKVTCNRNSFKAAEIGGQFHLINGEASGRVIELSQSLNTSSMVLKEHFEPGATLETSLRHCQSFDQQSSISILPLDHFIYFSRHSDMMCAGNRIWSPTPQLHQVSNAVDDEVFNDQVSQHSKLDFWEELPTKKRRLMHFPGGSDGILTSFLPSCDFE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03433 376 CDD RING-H2_PA-TM-RING 129 173 - -
Tsu02g03433 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 179 IPR013083 -
Tsu02g03433 376 PANTHER LIPASE 117 238 IPR006873 -
Tsu02g03433 376 ProSiteProfiles Zinc finger RING-type profile. 130 173 IPR001841 -
Tsu02g03433 376 SUPERFAMILY RING/U-box 120 177 - -
Tsu02g03433 376 PANTHER LIPASE 117 238 - -
Tsu02g03433 376 Pfam Ring finger domain 129 173 IPR001841 -
Tsu02g03433 376 SMART ring_2 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03433 Tsu-Chr2 38427011 38429849 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03433 123 174 C3H Transcription Factor Family AT5G66070 50.000 1.79e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03433 - - cam:101491039 99.3673