Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03415 atgGGTTGTGTTCTTCCTTCAGAACTGAGTTTAGATTTAAGACCAACTTTCGTCCCCAAAACCATCGCTAATTTCCTCTACCACCTTTCCACCCTTCAAACTACCTCCGATAAACTCTCCAAACTCCATGATTTTCTCTCTCGATTTGAAGAAGAACTCAATAAGATCCAAGCTTTCAAACGCGAACTCCCTCTTTGTATGCTTCTCTTAATCGATGCAATTTCAGTTTTGAAAGAAGAATTGGAAAAATGTAGAACTCAGAATTCTATTCCTGTTTTGGAAGAGTTTATTCCTTTGAAGAAAGAGATTGATCAAagtgaagaaaataataataatgatgatagagataataacatcaacaacaataacaatgaATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTATGGAATAACAACACAACTACTAATAATAATGTTGTTGATCATGATAAACATAACAATAATCATAATAAATTAGAAACTAAGAAAAGGGAAGAGGAAGGACAATCTATGACTATAGCTGAGGAAACTTTTCAATCTTGTAGTAGTAATAGGAATGGAGGAAGTGCTTTTATGCCTTTTTCGACATACTCTTCTGTTCCGGTGACAACGGTGAAACTATCAGCACCTAAAGAAGAGAAGGAAGAAACTGTTATGAATGGATTCTCTCTTCTTACCTCTGGAGTGAAAAGTTTGAGGGAAGGATTTGGTTCGAGGGGATCGAGAAGCAGTTCTAATAGGGCAGTTTCGTCTTCTCCTCCAACCGTGCAGCCAAGTTTGCGTACTCCGCCACTTCAGCCACAACAGACTTCTAGGAAACAGAGGAGATGCTGGTCACCGGAATTGCACCGGCGATTTGTTAATGCATTGCAAAAGCTTGGAGGTACTCAAGCAGCAACTCCAAAGCAAATTAGAGAACTTATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAGTGAGTTCTTgA 990 0.3697 MGCVLPSELSLDLRPTFVPKTIANFLYHLSTLQTTSDKLSKLHDFLSRFEEELNKIQAFKRELPLCMLLLIDAISVLKEELEKCRTQNSIPVLEEFIPLKKEIDQSEENNNNDDRDNNINNNNNECRDKKNWMSSVQLWNNNTTTNNNVVDHDKHNNNHNKLETKKREEEGQSMTIAEETFQSCSSNRNGGSAFMPFSTYSSVPVTTVKLSAPKEEKEETVMNGFSLLTSGVKSLREGFGSRGSRSSSNRAVSSSPPTVQPSLRTPPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGTQAATPKQIRELMQVDGLTNDEVKSHLQVSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03415 329 MobiDBLite consensus disorder prediction 236 281 - -
Tsu02g03415 329 Pfam Myb-like DNA-binding domain 278 326 IPR001005 -
Tsu02g03415 329 MobiDBLite consensus disorder prediction 145 172 - -
Tsu02g03415 329 PANTHER TRANSCRIPTION FACTOR HHO6 8 326 - -
Tsu02g03415 329 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 276 327 IPR006447 GO:0003677
Tsu02g03415 329 Gene3D - 275 328 - -
Tsu02g03415 329 SUPERFAMILY Homeodomain-like 273 326 IPR009057 -
Tsu02g03415 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 326 IPR044787 GO:0003700|GO:0006355
Tsu02g03415 329 Coils Coil 152 172 - -
Tsu02g03415 329 MobiDBLite consensus disorder prediction 152 172 - -
Tsu02g03415 329 MobiDBLite consensus disorder prediction 104 127 - -
Tsu02g03415 329 MobiDBLite consensus disorder prediction 240 278 - -
Tsu02g03415 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 273 329 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03415 Tsu-Chr2 38195911 38199481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03415 7 326 G2-like Transcription Factor Family AT2G03500 38.855 5.88e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu02g03415 Myb_DNA-binding 2.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03415 - - mtr:MTR_4g086835 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03415 02 38195911 38199481 Tsu02g03415 02 38195911 38199481 ECH