Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03410 atgagGAGAATAATGTGCTTCTTAGATATTAGCATAGGTGAAGAACTTGAAGGAAGAATATTGGTGGAACTTTACAATGATGTTGTTCCAAAAACTGCTGAGAATTTTAGAGCTCTATGCACTGGTGAAAAAGGCATTGGTCCTAATACTGGGGTGCCCCTTCATTTTAAGGGGTCTTGCTTCCATCCTATTGTTAAAGGTTGTATGATCGAAGGAGGTGATATATCTGCCGGAGACGGTACCGGAGGAGAATCTATATATGGACTCAAGTTTGAAGACgaaaattttgaattgaagCATGAAAGGAAAGGGATGTTATCAATGGCAAACACCGGTCCTAATACAAATGGTTCTCAGTTTTTCATCTCTACTACCCGAACAGCTCATTTAGATGGTAAGCATGTTGTATTTGGGAAAGTAGTCAAAGGAATGGGCGTAGTCCGTTCAATTGAGCATGTTACGACCGGAGATGTGGACTGTCCTGTTCTTGATGTTAAAATCGTGGATTGCGGAGAAATTCTTGAAGGAGAAGATGATGGTATAACTAACTTTTTCAAAGACGGCGATACTTATCCTGATTGGCCAGCAGACCTTTCTGAGAGCCCTAGTGAACTTGAATGGTGGTTGAAATCTGTTGACTCAATCAAAGCTTTTGGTAATGAGTATTACAAGAAACAAGACTTCAAAATGGCGCAAAGGAAGTATCGAAAGGCTTTACGTTACTTGGATATTTGTTGGGAGAAGGAAGGGATTGATGAAGATAAAAGTTCAGGCTTGAGAAAAACGAAATCGCAGATATTTACAAACAGCTCCgcTTGTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGACACAGAATTCGCAATGCGTGAAGGTTATAACAATGCCAAAGCTTTGTTCCGCCAAGGACAGGCATACATGGTACTCAACGACATCGATGCTGCCGTTGAAAGCTTTAAAAAGGCACTGACATTGGTTCCAAATGATGCTGGTATAAAAAAGGAACTCGCAGCTGCCAGAAAGAAGATATCTGATAGAACTGATCTAGAGAAAAAAGCATATAGTAAGATGTTCCAATAA 1086 0.3913 MRRIMCFLDISIGEELEGRILVELYNDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHPIVKGCMIEGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANTGPNTNGSQFFISTTRTAHLDGKHVVFGKVVKGMGVVRSIEHVTTGDVDCPVLDVKIVDCGEILEGEDDGITNFFKDGDTYPDWPADLSESPSELEWWLKSVDSIKAFGNEYYKKQDFKMAQRKYRKALRYLDICWEKEGIDEDKSSGLRKTKSQIFTNSSACKLKLGDIKGALLDTEFAMREGYNNAKALFRQGQAYMVLNDIDAAVESFKKALTLVPNDAGIKKELAAARKKISDRTDLEKKAYSKMFQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03410 361 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Tsu02g03410 361 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Tsu02g03410 361 SUPERFAMILY Cyclophilin-like 5 175 IPR029000 -
Tsu02g03410 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 361 - -
Tsu02g03410 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Tsu02g03410 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Tsu02g03410 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Tsu02g03410 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Tsu02g03410 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Tsu02g03410 361 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Tsu02g03410 361 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Tsu02g03410 361 SMART tpr_5 212 245 IPR019734 GO:0005515
Tsu02g03410 361 SMART tpr_5 298 331 IPR019734 GO:0005515
Tsu02g03410 361 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Tsu02g03410 361 SUPERFAMILY TPR-like 208 358 IPR011990 GO:0005515
Tsu02g03410 361 Gene3D - 1 179 IPR029000 -
Tsu02g03410 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 361 - -
Tsu02g03410 361 Gene3D Tetratricopeptide repeat domain 212 361 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03410 Tsu-Chr2 38132406 38135981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03410 14 170 U-box Gene Family AT5G67530 40.506 2.63e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03410 K05864 - gmx:100804110 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03410 02 38132406 38135981 Tsu02g03410 02 38132406 38135981 ECH