Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03398 ATGGCTCAACAAACCAACGGTGGAGATCTGAATCAGAACAACAataacagcaacaacaaccagaATCAGACACCTCAGCAGCAGCATCAGCAACAGTGGGCGGCGGCGCAACCGCATCAGTATCAACAACAATGGATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAGCAACAGATGATGATGTATCCACAGCATTACATGCCGTATGTTCATCCTCATCATTATCAGCAGCCGCCTCATCAGCAGCAAGTGTCGCCGCCGCCGAATCAGAGTCACCATAACCATAACCATCATCACCAGCAGCAGCATCAGTATCAGCAGAAACAAGTTTCTCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGACGAGACTTTTCTTCATAACTGCTTTGCTCATACCGGCGAGGTTGTATCGGCAAAAGTCATACGTAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTCGAGTTCTATTCGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTTAATGGTACTATGATGCCAAATACAGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGTGCTGCTGGCGGCGGTGGCGGTGAAAGGCGTTCTTCTGAGGCTACTTCTGATCTCTCCGTTTTTGTCGGAGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAAGTGTTTGCTAGTAGATTCTCTTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCGAAAGGCTATGGCTTTGTTAGGTTTGGGGATGAAAATGAAAGGACAAGGGCAATGACTGAAATGAACGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACGCCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCACAAGTGTTGGCTGGTGGTGGTGGACATTCATCCAACGGTGCTGTGGCCCAAGGTTCCCAATCTGACGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGGGATGTCGTCTCTGTGAAAATTCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGGTACGCTTGTGGTAGTATCCCTTAA 1170 0.453 MAQQTNGGDLNQNNNNSNNNQNQTPQQQHQQQWAAAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQPPHQQQVSPPPNQSHHNHNHHHQQQHQYQQKQVSPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQVLAGGGGHSSNGAVAQGSQSDGDSNNTTIFVGGLDSEISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRYACGSIP 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03398 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 297 IPR000504 GO:0003723
Tsu02g03398 389 Gene3D - 303 386 IPR012677 -
Tsu02g03398 389 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 31 383 - -
Tsu02g03398 389 SUPERFAMILY RNA-binding domain, RBD 218 382 IPR035979 GO:0003676
Tsu02g03398 389 MobiDBLite consensus disorder prediction 310 339 - -
Tsu02g03398 389 MobiDBLite consensus disorder prediction 74 114 - -
Tsu02g03398 389 Gene3D - 118 198 IPR012677 -
Tsu02g03398 389 Gene3D - 200 302 IPR012677 -
Tsu02g03398 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 199 IPR000504 GO:0003723
Tsu02g03398 389 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 31 383 - -
Tsu02g03398 389 SUPERFAMILY RNA-binding domain, RBD 82 201 IPR035979 GO:0003676
Tsu02g03398 389 MobiDBLite consensus disorder prediction 1 36 - -
Tsu02g03398 389 SMART rrm1_1 338 388 IPR000504 GO:0003723
Tsu02g03398 389 SMART rrm1_1 219 293 IPR000504 GO:0003723
Tsu02g03398 389 SMART rrm1_1 120 195 IPR000504 GO:0003723
Tsu02g03398 389 CDD RRM1_SECp43_like 120 199 - -
Tsu02g03398 389 CDD RRM2_SECp43_like 217 296 - -
Tsu02g03398 389 MobiDBLite consensus disorder prediction 79 94 - -
Tsu02g03398 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 188 IPR000504 GO:0003723
Tsu02g03398 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 289 IPR000504 GO:0003723
Tsu02g03398 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 339 381 IPR000504 GO:0003723
Tsu02g03398 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 381 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03398 Tsu-Chr2 38024257 38028701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03398 121 389 Eukaryotic Initiation Factors Gene Family AT2G36660 25.547 1.55e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03398 - - mtr:MTR_4g086600 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03398 02 38024257 38028701 Tsu02g03398 02 38024257 38028701 ECH