Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g03398 | ATGGCTCAACAAACCAACGGTGGAGATCTGAATCAGAACAACAataacagcaacaacaaccagaATCAGACACCTCAGCAGCAGCATCAGCAACAGTGGGCGGCGGCGCAACCGCATCAGTATCAACAACAATGGATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAGCAACAGATGATGATGTATCCACAGCATTACATGCCGTATGTTCATCCTCATCATTATCAGCAGCCGCCTCATCAGCAGCAAGTGTCGCCGCCGCCGAATCAGAGTCACCATAACCATAACCATCATCACCAGCAGCAGCATCAGTATCAGCAGAAACAAGTTTCTCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGACGAGACTTTTCTTCATAACTGCTTTGCTCATACCGGCGAGGTTGTATCGGCAAAAGTCATACGTAATAAGCAAACTGGTCAGTCGGAGGGATATGGATTTGTCGAGTTCTATTCGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTTAATGGTACTATGATGCCAAATACAGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGTGCTGCTGGCGGCGGTGGCGGTGAAAGGCGTTCTTCTGAGGCTACTTCTGATCTCTCCGTTTTTGTCGGAGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAAGTGTTTGCTAGTAGATTCTCTTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGTTCGAAAGGCTATGGCTTTGTTAGGTTTGGGGATGAAAATGAAAGGACAAGGGCAATGACTGAAATGAACGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACGCCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCACAAGTGTTGGCTGGTGGTGGTGGACATTCATCCAACGGTGCTGTGGCCCAAGGTTCCCAATCTGACGGGGATTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGAAATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGGGATGTCGTCTCTGTGAAAATTCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGGTACGCTTGTGGTAGTATCCCTTAA | 1170 | 0.453 | MAQQTNGGDLNQNNNNSNNNQNQTPQQQHQQQWAAAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQPPHQQQVSPPPNQSHHNHNHHHQQQHQYQQKQVSPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQEVFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQVLAGGGGHSSNGAVAQGSQSDGDSNNTTIFVGGLDSEISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQLADRYACGSIP | 389 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g03398 | 389 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 218 | 297 | IPR000504 | GO:0003723 | |
Tsu02g03398 | 389 | Gene3D | - | 303 | 386 | IPR012677 | - | |
Tsu02g03398 | 389 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 31 | 383 | - | - | |
Tsu02g03398 | 389 | SUPERFAMILY | RNA-binding domain, RBD | 218 | 382 | IPR035979 | GO:0003676 | |
Tsu02g03398 | 389 | MobiDBLite | consensus disorder prediction | 310 | 339 | - | - | |
Tsu02g03398 | 389 | MobiDBLite | consensus disorder prediction | 74 | 114 | - | - | |
Tsu02g03398 | 389 | Gene3D | - | 118 | 198 | IPR012677 | - | |
Tsu02g03398 | 389 | Gene3D | - | 200 | 302 | IPR012677 | - | |
Tsu02g03398 | 389 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 119 | 199 | IPR000504 | GO:0003723 | |
Tsu02g03398 | 389 | PANTHER | POLYADENYLATE-BINDING PROTEIN RBP47B | 31 | 383 | - | - | |
Tsu02g03398 | 389 | SUPERFAMILY | RNA-binding domain, RBD | 82 | 201 | IPR035979 | GO:0003676 | |
Tsu02g03398 | 389 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Tsu02g03398 | 389 | SMART | rrm1_1 | 338 | 388 | IPR000504 | GO:0003723 | |
Tsu02g03398 | 389 | SMART | rrm1_1 | 219 | 293 | IPR000504 | GO:0003723 | |
Tsu02g03398 | 389 | SMART | rrm1_1 | 120 | 195 | IPR000504 | GO:0003723 | |
Tsu02g03398 | 389 | CDD | RRM1_SECp43_like | 120 | 199 | - | - | |
Tsu02g03398 | 389 | CDD | RRM2_SECp43_like | 217 | 296 | - | - | |
Tsu02g03398 | 389 | MobiDBLite | consensus disorder prediction | 79 | 94 | - | - | |
Tsu02g03398 | 389 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 121 | 188 | IPR000504 | GO:0003723 | |
Tsu02g03398 | 389 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 220 | 289 | IPR000504 | GO:0003723 | |
Tsu02g03398 | 389 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 339 | 381 | IPR000504 | GO:0003723 | |
Tsu02g03398 | 389 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 337 | 381 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g03398 | Tsu-Chr2 | 38024257 | 38028701 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g03398 | 121 | 389 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 25.547 | 1.55e-14 | 73.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g03398 | - | - | mtr:MTR_4g086600 | 525.398 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu02g03398 | 02 | 38024257 | 38028701 | Tsu02g03398 | 02 | 38024257 | 38028701 | ECH |