Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03382 ATGACCCTACCTCCGGTTGACTATGGTTTAAAGCGTCCTCTTTCACAGCATcaacaacattcatcatcaaGTGAGAAAAAGAAGGAAGTGGAGATTTATATACCAGAAGGTACAAACCCTGAAGTTAACACTGAAGAGCATGAGAAGCTTCTTGGAGATTGTGAAACTGCTTGGGAATTgCGTATAACTATTAGTCAGATGACCAGTTGCAACAAATGCGAGTTACCCCAAGGGCAGCTCTGTGGAGATTGCTTGTACACAAGATGTGGAGAAAATGTGAGAGAAGCCGATTTCAATCCCAAGTGGACTGCCCTTGTTGCCGAGAAATTTGCAACTGCAATAGTTGTCGTAGGAAAAATGTTTGGATGCCTACTGCGTCTCAGCGGAAATGGAATCTACTCGGTGCCATACTATCAATTGATGGAAGTTATAATTGATAATAACCACCTAAAGATTGAAGATGAAATGAATGTGGATACTTTATCTAGAATTGTCATGATTATGTGGACGATTTGGTGGAGGCGTAATCAAAAGTGCTGGAACGAACAGCTACTGCCGGTAAATAATGTCATCAGACGCGCGAGAGACAGCTTGCTGGACTGGATTCACACACAGAAGAAACATAGcagacaacaacaacaacaacaacaacaacaacaacagaatTCTGCTATGGCATGTTATGTTTGGACGAAACCAGCGAGAGGAACACTTAAATGCAACTTTGACACGGTGTGTTACGACGCGCAAAATCTTTATTGTGTTGGAGCTTGCATAAGAGATGATAGGAGCATGTTTGTAGAAGCTATAATGAGGAATTACAATGGCAAGCCTCTGATAGCAGAAGCTGAAGCACATGGTGTATTGGAAGTGTTACAATGTTGTCTCGTCTTCTCTTGTTGTTCGTCACAAATCAAGGTTGTCTTGCCCTGTTCACAACAACTCTTCACTCTTATTGTTCCAGTGTTGCTTCTGTTCTGCCATCATCCTTCGCAAACCCAAAAGGGTCATGCTGGAACTCAACCCAGGATGATGACTTCTCAACTACCTCATGCTTATGTCGTTGATCACCACCTTATTCTCAATCAACATAACATCACTTCGGTTTTCACACAAACGAGAGACATTGAAGCTCCTACACGCCGATATCAACCTAGGGCGTTGGCTGTTCAAGATGCTCATAATGTTATTCTTCAGGAGGTGAACCAACAAGTTTCAACAACAAGAGGCCCTACTAGAAGACAGTATAACACTGATGTTTCGTCGGCTTATTATATCCAAGATGGCGTTTTTATTCTTGATGAAAGCATCAGTCAAGTGAACCAACAAGTTCCGACAAGAAGAGACAATGGAGGACGGTCTGATGCCAAGCTTGAGAGGATTATTATTCAACAAGTACCGACAGATTCTGAAGCTATGACATGTTCCATATGTCTTGTGGACTTTTCAGTTGGGTTGGAAGTTTTCCGATTGCTGAGTCCTTGTTTGCATATCTATCACAAAGATTGCATTCTCGAGTGGTTGGATAGATCTAGCACATGCCCTATGTGCCGTAGGCCTATGAATCCGGATATGTGGTATGTGGAGCTTGCTATTGGTGGCAGTAAGGTTCATGCTGGTCGCAATGGGAAGCTCATGTGGCGGCACACACCTTGGCTTGGTCCACATGCTGCTAAAGGGCCTGTGAGGCCTCTTCGGCGCGCACTTCAGGATCTTGATCCAAGAACAACTCCTAGTATGTTTATCAATGCAAGATGCATTGGGGAGAAGAAGATAAGTGAAGAGGATTGTTTCATCCTCAAGCTTTGTGCAGATCCATCGACATTAAAAGCCAGGAGTGAAGGTCCAGAAGAGAACATAAGGCATGTTTTGTTTGGATACTTTAGTCAGAAAAAAGGACTTCTTGTTCACTTAGAAGATCCCCATTTGACCCGCATTCAGAAGGCGATATAG 1953 0.4199 MTLPPVDYGLKRPLSQHQQHSSSSEKKKEVEIYIPEGTNPEVNTEEHEKLLGDCETAWELRITISQMTSCNKCELPQGQLCGDCLYTRCGENVREADFNPKWTALVAEKFATAIVVVGKMFGCLLRLSGNGIYSVPYYQLMEVIIDNNHLKIEDEMNVDTLSRIVMIMWTIWWRRNQKCWNEQLLPVNNVIRRARDSLLDWIHTQKKHSRQQQQQQQQQQQNSAMACYVWTKPARGTLKCNFDTVCYDAQNLYCVGACIRDDRSMFVEAIMRNYNGKPLIAEAEAHGVLEVLQCCLVFSCCSSQIKVVLPCSQQLFTLIVPVLLLFCHHPSQTQKGHAGTQPRMMTSQLPHAYVVDHHLILNQHNITSVFTQTRDIEAPTRRYQPRALAVQDAHNVILQEVNQQVSTTRGPTRRQYNTDVSSAYYIQDGVFILDESISQVNQQVPTRRDNGGRSDAKLERIIIQQVPTDSEAMTCSICLVDFSVGLEVFRLLSPCLHIYHKDCILEWLDRSSTCPMCRRPMNPDMWYVELAIGGSKVHAGRNGKLMWRHTPWLGPHAAKGPVRPLRRALQDLDPRTTPSMFINARCIGEKKISEEDCFILKLCADPSTLKARSEGPEENIRHVLFGYFSQKKGLLVHLEDPHLTRIQKAI 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03382 650 PANTHER LIPASE 521 648 IPR006873 -
Tsu02g03382 650 SUPERFAMILY RING/U-box 467 524 - -
Tsu02g03382 650 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 63 103 IPR018866 -
Tsu02g03382 650 Pfam Ring finger domain 474 518 IPR001841 -
Tsu02g03382 650 ProSiteProfiles Zinc finger RING-type profile. 475 518 IPR001841 -
Tsu02g03382 650 SMART ring_2 475 517 IPR001841 -
Tsu02g03382 650 CDD RING-H2_PA-TM-RING 474 518 - -
Tsu02g03382 650 Pfam Protein of unknown function (DUF620) 521 648 IPR006873 -
Tsu02g03382 650 MobiDBLite consensus disorder prediction 1 28 - -
Tsu02g03382 650 PANTHER LIPASE 521 648 - -
Tsu02g03382 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 525 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03382 Tsu-Chr2 37892411 37900351 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03382 421 530 C3H Transcription Factor Family AT4G00305 34.921 1.26e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03382 - - cam:101491039 244.202