Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03379 ATGACCCTGCCACCGGTTGACTATCATATCAAGCGTCCTTATGCAAAGCATCATCGACATTCATCATCAAGTAAGAAAAAGAAGGAAGTCGAGATTAGTATACCAGAAGATGATGCCTGCTATGGCAGGGCCACCCCCACTATCGACAACATTTGTTCTATGGTTTTTAAATGGTTTTACCATAGgCGTTTAACTATTAGTCAGATGACCAGTTGCAACAAATGCAAATTACCCCAAGAGCAGCTTTGTGGAGATTGCTTGTACACAAGTGTTAGATATTTTATGTTGCGAGGGTGGCAGGTAAAATCATTGTTGGAAGAGAAGATTATCTGCCTGGAGGAGGCTGAACTGATGGAGTTTGAAGAGATGCTAGATGGTGTGTCTGTGAGCCCCGGATCAGTTGATAAATGGGTCTGGAAGTATGATACAGCTGCTGGTTTTTCTGTTAAATCCGCATATAATTTGCTGCATGAGTTGCTGGTTCAGGATCAAGGTGATGAAGGACACTGTAACGCTTATAAGAAGCTCTGGAAGTGTTCAGCCCCATCGAAGTTTGTTATTCATGGATGGAGAGTTCTTATCAGTATAATCGCGACGAAGGAACATTTGTTGTCTCGTCTTGTCTTCTTCTTCACAAATCAAGGTTGTCTTGCCCTGTTCACAACAACTCAGGTTCCAGTGTTGCTTCTGTTCTGCCATCATCCTTCGCAAACCCAAAAGGGTCATGCTGGAACTCAACCCAGGATGATGACTTCTCAACTGTCTCATGCTTATGTTGTTGATCACCACCTTATTCTCAATCAACATAACATCAGTTCGGTTTTCACACAAACGAGAGACATTGAACCTCCTAGACGACGATATCAACCTAGGGTGTCGGCTGTTCAAGATGGTCATAATGTTATTCTTCAGGAGGTGAACCAACAAGTATCGACGAGAAGAGGTGCTACTAGAAGACGGTATAACACTGATGTTTCGTCGGCTTATTATATCCAAGATGGCGTTTTTATTCTTGATGAAAGCATCAGTCAAGTGAACCAACAAGTTCCGACAAGAAGAGACAATGGAGGACGGTTTGATGCCAAGCTTGAGAGGATTATTATTCAACAAGTACCGACAGATTCTGAAGCTATGACATGTTCCATATGTCTTGTGGACTTCTCAGTTGGGTTGGAAGTTTTCCGATTGCCGAGTCCGTGTCTGCATGTTTATCACAAAGATTGCATTCTCGAGTGGTTGGATAGATCTAGCACATGCCCTATGTGCCGTAGGCCTGTTGTCTCGTCTTGTCTTCTTCATCACAAATCAAGGTTGTCTTGCCCTGTTCACAACAACTCAGGTTCCTGTGTTGCTTCTGTTCTGCCATCATCCTTCGCAACACCCAAAAGACGGCTTAAGAGTCTTTGTGATTATGACACCACTCAACTTAATGCCATTGTGGATATGTGTTTTCAGTGCAACTATCAAGTTATGACATGCACTGTTGCTTCTTTTGCCGTACATCTTTTGAGAGAAACAAAGGGTCGTTGTTTTGATGTGATACTAATTGAAGCTCAAATGCCGGATATGGATTCATACGAGTTTTTGCAACGTGTTACACAGGAAATCAAAATTCCAGTCATTATGATGTCTGTTGAATACACAGCAAGTGCAAGGGTGAAGGCTATTGAAAAAGGGGCTTGTGATTATTGGCTAAAGCCTTTGAATGTGAATCATATCAACTACATGCGGCAAGATGTTGCAACATTTCAACAACATGATCAAATTCAAAGATCTTGGAGAGCTGTGAATCAACTTGGCATTGATAAGGCAAcgccaaaaaaaattactgaaTTGATGGATGTTCCGGGTTTGGAAAAGAAGCATGTTGCTAGCCATTTGCAGAAATTCAGACTTCGTTTGAAGAGTTCAAGTAAAAAGACAAAGTCAAAAAGTGGAAGGGAAAATTCAAAGCAGGATCAATATCATGTTCCTAATGAAAGCCTTGAAGTTGTTGAGTCAATGCCAGAACAGGATCAAAAATGTGATAACAGCTTTCATGCACAACAACAACATCTGATGgtgtttgatgaatttgatcTTTCCAATATTTTGACTAACGAAACCAACATGATGCTATATGAAGCATGGTATCCATCCGAAGAGTATGATTCAATTGATCACTATTTTGAGTAA 2175 0.4051 MTLPPVDYHIKRPYAKHHRHSSSSKKKKEVEISIPEDDACYGRATPTIDNICSMVFKWFYHRRLTISQMTSCNKCKLPQEQLCGDCLYTSVRYFMLRGWQVKSLLEEKIICLEEAELMEFEEMLDGVSVSPGSVDKWVWKYDTAAGFSVKSAYNLLHELLVQDQGDEGHCNAYKKLWKCSAPSKFVIHGWRVLISIIATKEHLLSRLVFFFTNQGCLALFTTTQVPVLLLFCHHPSQTQKGHAGTQPRMMTSQLSHAYVVDHHLILNQHNISSVFTQTRDIEPPRRRYQPRVSAVQDGHNVILQEVNQQVSTRRGATRRRYNTDVSSAYYIQDGVFILDESISQVNQQVPTRRDNGGRFDAKLERIIIQQVPTDSEAMTCSICLVDFSVGLEVFRLPSPCLHVYHKDCILEWLDRSSTCPMCRRPVVSSCLLHHKSRLSCPVHNNSGSCVASVLPSSFATPKRRLKSLCDYDTTQLNAIVDMCFQCNYQVMTCTVASFAVHLLRETKGRCFDVILIEAQMPDMDSYEFLQRVTQEIKIPVIMMSVEYTASARVKAIEKGACDYWLKPLNVNHINYMRQDVATFQQHDQIQRSWRAVNQLGIDKATPKKITELMDVPGLEKKHVASHLQKFRLRLKSSSKKTKSKSGRENSKQDQYHVPNESLEVVESMPEQDQKCDNSFHAQQQHLMVFDEFDLSNILTNETNMMLYEAWYPSEEYDSIDHYFE 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03379 724 Pfam Ring finger domain 379 423 IPR001841 -
Tsu02g03379 724 Gene3D - 467 585 - -
Tsu02g03379 724 SMART REC_2 467 577 IPR001789 GO:0000160
Tsu02g03379 724 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 468 692 - -
Tsu02g03379 724 Pfam Response regulator receiver domain 469 573 IPR001789 GO:0000160
Tsu02g03379 724 CDD RING-H2_PA-TM-RING 379 423 - -
Tsu02g03379 724 SUPERFAMILY RING/U-box 370 429 - -
Tsu02g03379 724 PANTHER TWO-COMPONENT RESPONSE REGULATOR 468 692 IPR045279 GO:0009736
Tsu02g03379 724 SUPERFAMILY Homeodomain-like 593 636 IPR009057 -
Tsu02g03379 724 SUPERFAMILY CheY-like 469 576 IPR011006 -
Tsu02g03379 724 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 594 633 IPR006447 GO:0003677
Tsu02g03379 724 ProSiteProfiles Zinc finger RING-type profile. 380 423 IPR001841 -
Tsu02g03379 724 Gene3D - 586 636 - -
Tsu02g03379 724 MobiDBLite consensus disorder prediction 636 658 - -
Tsu02g03379 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 428 IPR013083 -
Tsu02g03379 724 SMART ring_2 380 422 IPR001841 -
Tsu02g03379 724 ProSiteProfiles Response regulatory domain profile. 465 581 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03379 Tsu-Chr2 37879259 37885889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03379 469 647 Response Regulator Gene Family AT4G31920 30.303 9.65e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g03379 Response_reg 3.7e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03379 - K14491 mtr:MTR_6g045327 177.563