Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03376 ATGGCTCTTTCCACTGAGATTGATGACCTTCCCTACCAATTCCCAGAGGGCTTAAGAGTCTTTGTGATTGATCATGACACCACTCAACTTAATGCCATTGTGGATATGTGTTTTCAGTGCAACTATCAAGTTATGACATGCACTGTTGCTTCTTTTGCCGTACATCTTCTGAGAGAAACAAAGGGTCGTTGTTTTGATGTGATACTAATTGAAGCTCAAATGCCGGATATGGATTCGTACGAGTTTTTGCGACGTGTTACACAGGAAATCAAAATTCCAGTCATTATGATGTCTGTTGAATACACAGCAAGTGCAAGGGTGAAGGCTATTGAAAAAGGGGCTTTTGATTATTGGCTAAAGCCTTTGAATGTGAATCATATCAACTATATGCGGCAACATGTTGCAACATTTCAACAACATGATCAAATTCAAAGAATCTTGGAGGTAAAAACAGCACAAAAACTAATGAAGAGAGATGAAGAAAGTgcaacaaaagaaacaaatgcTTGTGTTCTTGAAACAAAGAATAATCGGGTATCATGGCGGTCACCAAGACTTCAAGAACAATTTTTAAGAGCTGTGAATCAACTTGGCATTGATAAGGCAAcgccaaaaaaaattactgaaTTGATGGATGTTCCGGGTTTGGATAGAAAGCATGTCGCTAGCCATTTGCAGAAATACAGACTTCGTTTGAAGAGTTCAAGTAAAAAGACAAAGTCAAAAAGTGGAAGGGAAAATTCAAAGCAGGATCAATATCATGTTCCTAATGAAAGCCTTGAAGTTGTTGAGTCAATGCCAGAACAGGATCAAAAATGTGATAACAACTTTCATGCACAACAACAACATCCGATGgtgtttgatgaatttgatcTTTCCAATATTTTGACTAACGAAACCAACATGATGCTATATGAAGCATGGTATCCATCCAAAGAATATGATTCAATTGATCACTATTTTGAGTAA 969 0.3529 MALSTEIDDLPYQFPEGLRVFVIDHDTTQLNAIVDMCFQCNYQVMTCTVASFAVHLLRETKGRCFDVILIEAQMPDMDSYEFLRRVTQEIKIPVIMMSVEYTASARVKAIEKGAFDYWLKPLNVNHINYMRQHVATFQQHDQIQRILEVKTAQKLMKRDEESATKETNACVLETKNNRVSWRSPRLQEQFLRAVNQLGIDKATPKKITELMDVPGLDRKHVASHLQKYRLRLKSSSKKTKSKSGRENSKQDQYHVPNESLEVVESMPEQDQKCDNNFHAQQQHPMVFDEFDLSNILTNETNMMLYEAWYPSKEYDSIDHYFE 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03376 322 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Tsu02g03376 322 CDD REC_typeB_ARR-like 20 135 - -
Tsu02g03376 322 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 297 IPR045279 GO:0009736
Tsu02g03376 322 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 176 231 IPR006447 GO:0003677
Tsu02g03376 322 Gene3D - 14 141 - -
Tsu02g03376 322 SUPERFAMILY CheY-like 16 142 IPR011006 -
Tsu02g03376 322 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 15 297 - -
Tsu02g03376 322 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Tsu02g03376 322 Gene3D - 173 234 - -
Tsu02g03376 322 SUPERFAMILY Homeodomain-like 175 234 IPR009057 -
Tsu02g03376 322 MobiDBLite consensus disorder prediction 234 256 - -
Tsu02g03376 322 SMART REC_2 18 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03376 Tsu-Chr2 37830417 37831385 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03376 1 245 Response Regulator Gene Family AT4G31920 34.646 2.49e-37 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g03376 Response_reg 6.1e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03376 - - mtr:MTR_6g045327 231.106