Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03340 ATGAACAACTACTCTTATTCCTCTTTCTCTCCTACCTCACTAACCTCCGATCAAGAACTCTCCGTCATTGTCGCCGCTTTAACAAACGTTGTCTCCGGTTCAACTTCAACGGAGTTTCATCTTCCGAATTCTGCCGCCGGAACTACCAGCAGTAGCGGCTTGGAACGAATAGTTCCGGTGGCGAATATGGAAACTTGCCGTGAATGTAACATAGCAGGGTGTTTAGGATGCAATTTCTTTCCTGAAGagaataagaaaaaacaaaagagagcTAAGAAGAAGTACAGAGGAGTTAGACAAAGACCATGGGGGAAATGGGCAGCAGAGATTCGTGATCCGAGACGCGCAACTCGTGTTTGGTTAGGAACTTTTACTACTGCTGAAGAAGCTGCTAGAGCTTATGATAATGCCGCGATTGAGTTTCGTGGACCGAGGGCTAAGCTTAATTTTCCTCTTGTTGATGAGTCTCTTAAGCATGTAGAGGAGCCAGAAATGGTTGTTGATGATACTTCTGTGAATTTCCAAGATGAGAATTTGAATCAAGAAATGCAAACAGAGACAAGTGTTGGATTTgggaataataataatgatttctGGAATAGGATTGGGGAAGCAGCTGATTTTCAACAACTTATGAGGATGATGGAGTTTGGTGGAGATTCTTCTGGTTCAAGACCAGGGAACAGTTTTAATTAG 696 0.4095 MNNYSYSSFSPTSLTSDQELSVIVAALTNVVSGSTSTEFHLPNSAAGTTSSSGLERIVPVANMETCRECNIAGCLGCNFFPEENKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNFPLVDESLKHVEEPEMVVDDTSVNFQDENLNQEMQTETSVGFGNNNNDFWNRIGEAADFQQLMRMMEFGGDSSGSRPGNSFN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03340 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 8 224 - -
Tsu02g03340 231 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Tsu02g03340 231 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Tsu02g03340 231 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
Tsu02g03340 231 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Tsu02g03340 231 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Tsu02g03340 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 224 - -
Tsu02g03340 231 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Tsu02g03340 231 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Tsu02g03340 231 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03340 Tsu-Chr2 37384237 37385239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03340 14 154 AP2-EREBP Transcription Factor Family AT4G34410 48.295 6.36e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g03340 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03340 - - ccaj:109799734 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03340 02 37384237 37385239 Tsu02g03340 02 37384237 37385239 ECH