Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g03320 ATGTCTCAATCAACAGAAACTTCCTTGAACAAGAATGTCAGTGACAACACCTCTACTCCATCGAAATCTACTCGCTCGAGAGTCAAGGAACAACCGGCAGCGCTAATTGTTCAAGCAACTCCTCTCGATACTGTGCATGCATCGGAAGTGGAAGCACGAGTGACTCAATCAAAGAGTGTCATCAAGAAAGAAAAGGTTTCCAAATCTCCCGCTGCATCAAAGAAGAGTACAAAATCGAAGCCAAAGAGgaagcgaggtgaatcaacgGCAACAATCGGCCTCACTATGTCCGATTTGTATCATTCTGACAATCCCTTCAAATCGCGCGATGTCGCGACCGATGTTGGCACTTCTGGCCATGATTCAAAAGGTAATAATGTTGTACCCTCTGATCCTGCTgttgatgaaacaaatattgttgaaaaatcTGTTGAATTGGAAGATCTAGTTGAAACTAAACAAACTGGAACCCTAGGTATTTCTGATTTAGAGAATGATAGGGATACTGGTATTGTTAATAAGGATGATGTTAATGTTGCTGAGAAAAATTCTAGTGATGAGACTGAAAAGACTAGGACTGATGTTGAAATAACTGAAAATTCTGGTGAGATTGAAAATTTAGGGAAAACTGGtcaggttgaaaccctagaaactGCTGATGTGAATACTGTGAGGAACTCTGAAGTTGTTCATGATGTTGATAACTCTGCTGTTgagaaaaatcctagtgatgtgcttgatgaaactaggaAGGTTGTTGAAAAAGTGGTGAAATGTGTTAGTGAATCTGATTCTCTAGCcaagtctgatgttgtgccagatgctcaagcatctttggaccaacaggttcgtAATCCTGATATTGTAGCAGAAGATTGTTCTAATTCTGGTTTTATTAGTGGCAATGTTGATGAGACAGGTACTGCTAGTAAGCAAGCTGATCATGATAATGTGACTAAAAAATCAGTTGAACCATCTAAGTTTAATGAGAGTGAGAAAACTGAAAATGATGTGGAGAGTGAAAGAAAAGACTCCTCTAGTGAGTCCTCAGAAGAAGAGAGTGGCtccactgaagaagctgagtctgatgggaataaggtgattgatgttgatgaagagaggTCTAAATCTCCTCCACTGGTGAAGACTTATGGTGCTGGTGTGGCTAAGAGACTAAGAAGCAATTatggtaaagctataccatctgtctccaagtcACCTGTTGTAGAGTCTATGAAGAAATCTGttaagaagcaaatAACACCACCTCAATCACGGATTCACGCTTCTGGAGCATCATCGGATTTTTTTCCCCATAATCGCCTCAATAATTCTCCATTTACTCCCACTAATTATTGGAATTTCTGGTGTTGTAGTACACTGATGGCTAACTCAAGTAACAAATCTACGGCAACAATGTCGTTGGACTCCATGGAACAGAAGGGGAAAAATATTGCTGAATCAAATGCAAGCATAATTCAATGTCCTATAAGCCAGCAATGCCGTAGCTCCTTAGATGGTCCAGTATCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCAGAAGATGTGGCGGGTAATATAAGAATGGCTCTGCAGGTGCACCCAGTAATTACAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGACGCTGCCGACAAAGCAATCTTGGTCGACATGTTCTTATTTGCTCTTGACAATCCCCCACCATCCTCTATCATGCTAATTTCTGGAGACGTTGATTTTGCTCCAGCGCTACACATTCTTGGTCAGCGGGGATACACTATAATTCTTGTCATCCCTGCTGGGGTTGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTATGGGACTGGCCTGTTGTGGCTCGTGGAGAAGGTTTCGTCCCCCCCTCAAAGGCTTTGGCACCACCACGTGGAGGTTCAGTTGAGCTTTCTGGATATTTGATGGGATGCCATATCAATGACAGCAATGATGgacaaaatgaagaagaagcaaTAGTTTATAGAGGGATGTCACAGAGCTATTACAACTCAAGGGAATACTCAGTGGTATCACAATCTCTGTCTGAATATAACTCACCGCACGTGTCTTACTTGCCAACATCTTTGAGATCATATAGCCTTCCATCTGGATTGAATGATGTTGCTGGAGGACCTGTGCCTTCTAGTGACAATACTGAATGCCAGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGTCAGATAATAAGGTTGCTTGAACTTTCTGGAGGATGCCTGCCCTTGGTTCGAGTTCCAGCAGAGTACCAGAAAATTTATGGTAAGCCACTCTTTATATCTGAATATGGGGCATTTAAGTTGGTCgatcttttcaaaaaaatggaTGATGCCATTTCTGTGGAAGGGAAAGGGGCTCGCAGATTTGTGCATCTCAGAAACAGGAAGGGAGGATCAGGTGCTCCTCCGCTGTCTCTTGCAAAGAAAGATAAGAAAGGAAAAAGGGCACTGGAAGAGAATGCAAATGTTGTCATTGGTGGCTGCTCTTCGGATGAGTTGTCAGATGAAGAAAGAGTAGTCATAGAAGAACGCGAGGAAAGAAGTTTTAATGGAAAGTGTAATAAGGGGAGAGCAGCCAGATGTGAAATTGATGGCCGTGTTCTTGAGCAGTTTAAGTGTGAGCTGCAGGAGATTCTCGTCAGCTATTCCTGTCGGATACTTCTAAGTTGTTTTGAAGCTGTATATCAGCAACGGTACAAGAAACAATTGGAATATCAGATATTTGGCGTGGACAAGTTGGAGGATTTGTTGGAGAAAGTGAGTGATGTGGTAGTATTGCAGGAGGAACAAGGAAGCAAGAGGAAATTCTTAGCTGCTGTTGGTAGTTAG 2976 0.3831 MSQSTETSLNKNVSDNTSTPSKSTRSRVKEQPAALIVQATPLDTVHASEVEARVTQSKSVIKKEKVSKSPAASKKSTKSKPKRKRGESTATIGLTMSDLYHSDNPFKSRDVATDVGTSGHDSKGNNVVPSDPAVDETNIVEKSVELEDLVETKQTGTLGISDLENDRDTGIVNKDDVNVAEKNSSDETEKTRTDVEITENSGEIENLGKTGQVETLETADVNTVRNSEVVHDVDNSAVEKNPSDVLDETRKVVEKVVKCVSESDSLAKSDVVPDAQASLDQQVRNPDIVAEDCSNSGFISGNVDETGTASKQADHDNVTKKSVEPSKFNESEKTENDVESERKDSSSESSEEESGSTEEAESDGNKVIDVDEERSKSPPLVKTYGAGVAKRLRSNYGKAIPSVSKSPVVESMKKSVKKQITPPQSRIHASGASSDFFPHNRLNNSPFTPTNYWNFWCCSTLMANSSNKSTATMSLDSMEQKGKNIAESNASIIQCPISQQCRSSLDGPVSILWDIENCPVPSDVRPEDVAGNIRMALQVHPVITGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTIILVIPAGVGVSSALCNAGKFVWDWPVVARGEGFVPPSKALAPPRGGSVELSGYLMGCHINDSNDGQNEEEAIVYRGMSQSYYNSREYSVVSQSLSEYNSPHVSYLPTSLRSYSLPSGLNDVAGGPVPSSDNTECQLWVQPGDLNGLKGQIIRLLELSGGCLPLVRVPAEYQKIYGKPLFISEYGAFKLVDLFKKMDDAISVEGKGARRFVHLRNRKGGSGAPPLSLAKKDKKGKRALEENANVVIGGCSSDELSDEERVVIEEREERSFNGKCNKGRAARCEIDGRVLEQFKCELQEILVSYSCRILLSCFEAVYQQRYKKQLEYQIFGVDKLEDLLEKVSDVVVLQEEQGSKRKFLAAVGS 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g03320 991 MobiDBLite consensus disorder prediction 1 136 - -
Tsu02g03320 991 ProSiteProfiles OST-type HTH domain profile. 916 990 IPR025605 -
Tsu02g03320 991 PANTHER - 457 986 - -
Tsu02g03320 991 CDD LOTUS 917 983 - -
Tsu02g03320 991 Pfam NYN domain 509 647 IPR021139 GO:0004540
Tsu02g03320 991 CDD LOTUS 772 841 - -
Tsu02g03320 991 PANTHER LIMKAIN B LKAP 457 986 IPR024768 GO:0005777|GO:0010468|GO:1903231
Tsu02g03320 991 Coils Coil 959 979 - -
Tsu02g03320 991 MobiDBLite consensus disorder prediction 359 378 - -
Tsu02g03320 991 Gene3D - 771 840 IPR041966 -
Tsu02g03320 991 Gene3D - 913 988 IPR041966 -
Tsu02g03320 991 MobiDBLite consensus disorder prediction 1 28 - -
Tsu02g03320 991 CDD PIN_limkain_b1_N_like 508 634 - -
Tsu02g03320 991 MobiDBLite consensus disorder prediction 56 71 - -
Tsu02g03320 991 MobiDBLite consensus disorder prediction 262 381 - -
Tsu02g03320 991 ProSiteProfiles OST-type HTH domain profile. 771 845 IPR025605 -
Tsu02g03320 991 Gene3D - 509 653 - -
Tsu02g03320 991 Pfam OST-HTH/LOTUS domain 916 981 IPR025605 -
Tsu02g03320 991 Pfam OST-HTH/LOTUS domain 773 837 IPR025605 -
Tsu02g03320 991 MobiDBLite consensus disorder prediction 309 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g03320 Tsu-Chr2 37175316 37184851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g03320 509 659 C2H2 Transcription Factor Family AT5G61190 45.033 3.80e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g03320 - - gmx:100818186 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03320 02 37175316 37184851 Tsu02g03320 02 37175316 37184851 ECH